Strain Fitness in Pseudomonas sp. DMC3 around GFF256

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF255 and GFF256 overlap by 1 nucleotidesGFF256 and GFF257 are separated by 220 nucleotides GFF255 - hypothetical protein, at 284,393 to 286,117 GFF255 GFF256 - Sulfate/thiosulfate import ATP-binding protein CysA, at 286,117 to 287,193 GFF256 GFF257 - HTH-type transcriptional activator CmpR, at 287,414 to 288,277 GFF257 Position (kb) 286 287 288Strain fitness (log2 ratio) -2 -1 0 1at 285.199 kb on - strand, within GFF255at 285.199 kb on - strand, within GFF255at 285.379 kb on - strand, within GFF255at 285.618 kb on + strand, within GFF255at 285.619 kb on - strand, within GFF255at 285.619 kb on - strand, within GFF255at 285.619 kb on - strand, within GFF255at 285.654 kb on + strand, within GFF255at 285.655 kb on - strand, within GFF255at 285.655 kb on - strand, within GFF255at 285.655 kb on - strand, within GFF255at 285.705 kb on + strand, within GFF255at 285.705 kb on + strand, within GFF255at 285.706 kb on - strand, within GFF255at 285.830 kb on + strand, within GFF255at 285.858 kb on - strand, within GFF255at 286.683 kb on + strand, within GFF256at 286.696 kb on + strand, within GFF256at 286.700 kb on - strand, within GFF256at 286.700 kb on - strand, within GFF256at 286.700 kb on - strand, within GFF256at 286.738 kb on + strand, within GFF256at 286.738 kb on + strand, within GFF256at 286.739 kb on - strand, within GFF256at 286.739 kb on - strand, within GFF256at 286.908 kb on - strand, within GFF256at 286.976 kb on + strand, within GFF256at 287.227 kb on + strandat 287.228 kb on - strandat 287.235 kb on + strandat 287.235 kb on + strandat 287.235 kb on + strandat 287.235 kb on + strandat 287.235 kb on + strandat 287.235 kb on + strandat 287.235 kb on + strandat 287.236 kb on - strandat 287.236 kb on - strandat 287.236 kb on - strandat 287.236 kb on - strandat 287.275 kb on + strandat 287.281 kb on + strandat 287.282 kb on - strandat 287.490 kb on + strandat 287.490 kb on + strandat 287.491 kb on - strandat 287.497 kb on - strandat 287.722 kb on + strand, within GFF257at 287.722 kb on + strand, within GFF257at 287.722 kb on + strand, within GFF257at 287.722 kb on + strand, within GFF257at 287.722 kb on + strand, within GFF257at 287.722 kb on + strand, within GFF257at 287.722 kb on + strand, within GFF257at 287.723 kb on - strand, within GFF257at 287.723 kb on - strand, within GFF257at 287.723 kb on - strand, within GFF257at 287.723 kb on - strand, within GFF257at 287.723 kb on - strand, within GFF257at 287.875 kb on - strand, within GFF257at 287.976 kb on + strand, within GFF257at 287.976 kb on + strand, within GFF257at 287.976 kb on + strand, within GFF257at 287.976 kb on + strand, within GFF257at 287.976 kb on + strand, within GFF257at 287.976 kb on + strand, within GFF257at 287.976 kb on + strand, within GFF257at 287.976 kb on + strand, within GFF257at 287.976 kb on + strand, within GFF257at 287.977 kb on - strand, within GFF257at 287.977 kb on - strand, within GFF257at 287.977 kb on - strand, within GFF257at 287.977 kb on - strand, within GFF257at 287.977 kb on - strand, within GFF257at 287.977 kb on - strand, within GFF257at 287.977 kb on - strand, within GFF257at 287.980 kb on - strand, within GFF257at 288.132 kb on + strand, within GFF257

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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285,199 - GFF255 0.47 +0.1
285,199 - GFF255 0.47 -0.2
285,379 - GFF255 0.57 -0.3
285,618 + GFF255 0.71 -0.1
285,619 - GFF255 0.71 +1.0
285,619 - GFF255 0.71 +0.4
285,619 - GFF255 0.71 +0.6
285,654 + GFF255 0.73 +0.0
285,655 - GFF255 0.73 +0.1
285,655 - GFF255 0.73 +0.1
285,655 - GFF255 0.73 -0.6
285,705 + GFF255 0.76 -1.1
285,705 + GFF255 0.76 -0.8
285,706 - GFF255 0.76 +0.1
285,830 + GFF255 0.83 +0.2
285,858 - GFF255 0.85 -0.4
286,683 + GFF256 0.53 -1.2
286,696 + GFF256 0.54 -0.6
286,700 - GFF256 0.54 -0.8
286,700 - GFF256 0.54 +0.4
286,700 - GFF256 0.54 -0.5
286,738 + GFF256 0.58 -1.6
286,738 + GFF256 0.58 +0.4
286,739 - GFF256 0.58 -2.0
286,739 - GFF256 0.58 -1.1
286,908 - GFF256 0.73 -0.7
286,976 + GFF256 0.80 -0.8
287,227 + +0.5
287,228 - -2.1
287,235 + +0.3
287,235 + +0.2
287,235 + -0.4
287,235 + -0.8
287,235 + +0.2
287,235 + -1.1
287,235 + +0.1
287,236 - -0.4
287,236 - -0.6
287,236 - +1.0
287,236 - -0.2
287,275 + +0.0
287,281 + -0.8
287,282 - -1.8
287,490 + +0.4
287,490 + +0.2
287,491 - -0.5
287,497 - -1.0
287,722 + GFF257 0.36 -0.9
287,722 + GFF257 0.36 -0.2
287,722 + GFF257 0.36 +0.3
287,722 + GFF257 0.36 +0.8
287,722 + GFF257 0.36 +0.4
287,722 + GFF257 0.36 +0.3
287,722 + GFF257 0.36 +1.4
287,723 - GFF257 0.36 +0.3
287,723 - GFF257 0.36 -0.5
287,723 - GFF257 0.36 -2.7
287,723 - GFF257 0.36 -1.2
287,723 - GFF257 0.36 -0.4
287,875 - GFF257 0.53 +0.2
287,976 + GFF257 0.65 -0.9
287,976 + GFF257 0.65 +0.2
287,976 + GFF257 0.65 -0.4
287,976 + GFF257 0.65 +0.1
287,976 + GFF257 0.65 +0.8
287,976 + GFF257 0.65 +0.8
287,976 + GFF257 0.65 -0.8
287,976 + GFF257 0.65 -0.1
287,976 + GFF257 0.65 +0.3
287,977 - GFF257 0.65 -0.8
287,977 - GFF257 0.65 +0.6
287,977 - GFF257 0.65 +0.6
287,977 - GFF257 0.65 +0.3
287,977 - GFF257 0.65 -0.6
287,977 - GFF257 0.65 +0.3
287,977 - GFF257 0.65 -0.1
287,980 - GFF257 0.66 +0.1
288,132 + GFF257 0.83 -1.0

Or see this region's nucleotide sequence