Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2537 and GFF2538 are separated by 8 nucleotides GFF2538 and GFF2539 overlap by 1 nucleotides GFF2539 and GFF2540 are separated by 373 nucleotides
GFF2537 - hypothetical protein, at 328,270 to 328,983
GFF2537
GFF2538 - Phosphoribosylglycinamide formyltransferase, at 328,992 to 329,642
GFF2538
GFF2539 - Phosphoribosylformylglycinamidine cyclo-ligase, at 329,642 to 330,700
GFF2539
GFF2540 - hypothetical protein, at 331,074 to 332,132
GFF2540
Position (kb) 329
330
331 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 328.730 kb on + strand, within GFF2537 at 328.731 kb on - strand, within GFF2537 at 328.898 kb on + strand, within GFF2537 at 328.898 kb on + strand, within GFF2537 at 328.898 kb on + strand, within GFF2537 at 328.898 kb on + strand, within GFF2537 at 328.899 kb on - strand, within GFF2537 at 328.899 kb on - strand, within GFF2537 at 328.899 kb on - strand, within GFF2537 at 328.899 kb on - strand, within GFF2537 at 328.983 kb on + strand at 328.983 kb on + strand at 328.983 kb on + strand at 328.983 kb on + strand at 328.983 kb on + strand at 328.984 kb on - strand at 328.984 kb on - strand at 328.984 kb on - strand at 328.984 kb on - strand at 328.984 kb on - strand at 328.986 kb on + strand at 328.986 kb on + strand at 328.986 kb on + strand at 328.986 kb on + strand at 328.986 kb on + strand at 328.987 kb on - strand at 328.987 kb on - strand at 328.987 kb on - strand at 328.987 kb on - strand at 328.987 kb on - strand at 328.987 kb on - strand at 328.987 kb on - strand at 328.994 kb on - strand at 328.994 kb on - strand at 328.994 kb on - strand at 329.026 kb on - strand at 329.088 kb on + strand, within GFF2538 at 329.089 kb on - strand, within GFF2538 at 329.089 kb on - strand, within GFF2538 at 329.102 kb on - strand, within GFF2538 at 329.173 kb on - strand, within GFF2538 at 329.181 kb on + strand, within GFF2538 at 329.277 kb on + strand, within GFF2538 at 329.278 kb on - strand, within GFF2538 at 329.278 kb on - strand, within GFF2538 at 329.287 kb on + strand, within GFF2538 at 329.287 kb on + strand, within GFF2538 at 329.287 kb on + strand, within GFF2538 at 329.288 kb on - strand, within GFF2538 at 329.288 kb on - strand, within GFF2538 at 329.288 kb on - strand, within GFF2538 at 329.379 kb on + strand, within GFF2538 at 329.510 kb on - strand, within GFF2538 at 329.594 kb on + strand at 329.774 kb on + strand, within GFF2539 at 329.775 kb on - strand, within GFF2539 at 329.775 kb on - strand, within GFF2539 at 329.775 kb on - strand, within GFF2539 at 329.807 kb on + strand, within GFF2539 at 330.015 kb on + strand, within GFF2539 at 330.015 kb on + strand, within GFF2539 at 330.015 kb on + strand, within GFF2539 at 330.016 kb on - strand, within GFF2539 at 330.016 kb on - strand, within GFF2539 at 330.016 kb on - strand, within GFF2539 at 330.016 kb on - strand, within GFF2539 at 330.240 kb on + strand, within GFF2539 at 330.240 kb on + strand, within GFF2539 at 330.241 kb on - strand, within GFF2539 at 330.241 kb on - strand, within GFF2539 at 330.255 kb on + strand, within GFF2539 at 330.255 kb on + strand, within GFF2539 at 330.255 kb on + strand, within GFF2539 at 330.255 kb on + strand, within GFF2539 at 330.255 kb on + strand, within GFF2539 at 330.255 kb on + strand, within GFF2539 at 330.256 kb on - strand, within GFF2539 at 330.256 kb on - strand, within GFF2539 at 330.256 kb on - strand, within GFF2539 at 330.256 kb on - strand, within GFF2539 at 330.375 kb on + strand, within GFF2539 at 330.375 kb on + strand, within GFF2539 at 330.376 kb on - strand, within GFF2539 at 330.378 kb on + strand, within GFF2539 at 330.538 kb on - strand, within GFF2539 at 330.675 kb on + strand at 330.676 kb on - strand at 330.834 kb on + strand at 330.835 kb on - strand at 330.914 kb on - strand at 330.914 kb on - strand at 330.914 kb on - strand at 330.925 kb on + strand at 330.925 kb on + strand at 330.925 kb on + strand at 330.925 kb on + strand at 330.925 kb on + strand at 330.926 kb on - strand at 330.926 kb on - strand at 330.926 kb on - strand at 330.927 kb on + strand at 330.928 kb on - strand at 330.928 kb on - strand at 330.928 kb on - strand at 330.949 kb on + strand at 330.955 kb on + strand at 330.973 kb on + strand at 331.090 kb on + strand at 331.090 kb on + strand at 331.099 kb on + strand at 331.099 kb on + strand at 331.100 kb on - strand at 331.100 kb on - strand at 331.155 kb on + strand at 331.155 kb on + strand at 331.642 kb on - strand, within GFF2540
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 328,730 + GFF2537 0.64 -0.0 328,731 - GFF2537 0.65 -0.0 328,898 + GFF2537 0.88 -0.2 328,898 + GFF2537 0.88 -1.7 328,898 + GFF2537 0.88 +0.7 328,898 + GFF2537 0.88 -1.8 328,899 - GFF2537 0.88 +0.5 328,899 - GFF2537 0.88 -0.0 328,899 - GFF2537 0.88 -0.7 328,899 - GFF2537 0.88 -1.0 328,983 + +0.3 328,983 + +0.9 328,983 + +0.1 328,983 + +0.0 328,983 + -1.0 328,984 - +0.0 328,984 - +0.3 328,984 - -0.4 328,984 - -0.1 328,984 - +0.1 328,986 + +0.4 328,986 + +0.8 328,986 + -0.1 328,986 + +0.6 328,986 + -1.0 328,987 - -0.5 328,987 - -0.7 328,987 - -0.6 328,987 - -0.8 328,987 - -0.2 328,987 - +0.3 328,987 - -0.4 328,994 - +0.8 328,994 - -0.2 328,994 - -0.7 329,026 - -0.1 329,088 + GFF2538 0.15 -0.7 329,089 - GFF2538 0.15 -3.1 329,089 - GFF2538 0.15 -4.1 329,102 - GFF2538 0.17 -1.1 329,173 - GFF2538 0.28 -2.1 329,181 + GFF2538 0.29 -2.6 329,277 + GFF2538 0.44 -0.7 329,278 - GFF2538 0.44 -3.0 329,278 - GFF2538 0.44 -3.1 329,287 + GFF2538 0.45 -1.7 329,287 + GFF2538 0.45 -0.4 329,287 + GFF2538 0.45 -2.7 329,288 - GFF2538 0.45 -2.7 329,288 - GFF2538 0.45 -2.8 329,288 - GFF2538 0.45 -3.1 329,379 + GFF2538 0.59 -2.8 329,510 - GFF2538 0.80 -1.2 329,594 + -2.5 329,774 + GFF2539 0.12 -1.0 329,775 - GFF2539 0.13 -0.4 329,775 - GFF2539 0.13 -0.7 329,775 - GFF2539 0.13 -1.7 329,807 + GFF2539 0.16 -1.0 330,015 + GFF2539 0.35 -2.5 330,015 + GFF2539 0.35 -1.7 330,015 + GFF2539 0.35 -1.0 330,016 - GFF2539 0.35 -2.0 330,016 - GFF2539 0.35 -1.5 330,016 - GFF2539 0.35 -3.3 330,016 - GFF2539 0.35 -0.7 330,240 + GFF2539 0.56 -2.5 330,240 + GFF2539 0.56 -1.7 330,241 - GFF2539 0.57 -1.8 330,241 - GFF2539 0.57 -1.8 330,255 + GFF2539 0.58 -1.5 330,255 + GFF2539 0.58 -1.5 330,255 + GFF2539 0.58 -2.7 330,255 + GFF2539 0.58 -1.8 330,255 + GFF2539 0.58 -1.5 330,255 + GFF2539 0.58 -2.2 330,256 - GFF2539 0.58 -2.0 330,256 - GFF2539 0.58 -0.4 330,256 - GFF2539 0.58 -1.2 330,256 - GFF2539 0.58 -1.7 330,375 + GFF2539 0.69 -2.5 330,375 + GFF2539 0.69 -2.6 330,376 - GFF2539 0.69 -1.8 330,378 + GFF2539 0.69 -1.0 330,538 - GFF2539 0.85 -2.5 330,675 + -2.1 330,676 - -0.8 330,834 + -2.0 330,835 - -0.7 330,914 - -1.5 330,914 - +0.4 330,914 - -0.0 330,925 + +0.0 330,925 + +0.4 330,925 + -0.2 330,925 + -0.1 330,925 + -1.5 330,926 - -0.7 330,926 - +0.1 330,926 - +0.0 330,927 + -0.7 330,928 - +1.4 330,928 - +0.0 330,928 - -0.1 330,949 + -0.8 330,955 + -0.0 330,973 + +0.2 331,090 + -0.3 331,090 + +0.3 331,099 + +0.0 331,099 + +0.4 331,100 - +0.1 331,100 - +0.4 331,155 + -1.4 331,155 + -0.4 331,642 - GFF2540 0.54 +1.2
Or see this region's nucleotide sequence