Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2500 and GFF2501 are separated by 170 nucleotides GFF2501 and GFF2502 are separated by 119 nucleotides
GFF2500 - Putative hydroxypyruvate reductase, at 285,855 to 287,129
GFF2500
GFF2501 - 2-hydroxy-3-oxopropionate reductase, at 287,300 to 288,193
GFF2501
GFF2502 - Hydroxypyruvate isomerase, at 288,313 to 289,095
GFF2502
Position (kb) 287
288
289 Strain fitness (log2 ratio) -2
-1
0
1 at 286.454 kb on + strand, within GFF2500 at 286.454 kb on + strand, within GFF2500 at 286.455 kb on - strand, within GFF2500 at 286.588 kb on + strand, within GFF2500 at 286.589 kb on - strand, within GFF2500 at 286.589 kb on - strand, within GFF2500 at 286.589 kb on - strand, within GFF2500 at 286.589 kb on - strand, within GFF2500 at 286.592 kb on + strand, within GFF2500 at 286.592 kb on + strand, within GFF2500 at 286.592 kb on + strand, within GFF2500 at 286.592 kb on + strand, within GFF2500 at 286.592 kb on + strand, within GFF2500 at 286.593 kb on - strand, within GFF2500 at 286.593 kb on - strand, within GFF2500 at 287.152 kb on + strand at 287.153 kb on - strand at 287.301 kb on + strand at 287.301 kb on + strand at 287.301 kb on + strand at 287.302 kb on - strand at 287.302 kb on - strand at 287.302 kb on - strand at 287.403 kb on - strand, within GFF2501 at 287.847 kb on + strand, within GFF2501 at 287.992 kb on + strand, within GFF2501 at 288.188 kb on - strand at 288.261 kb on + strand at 288.374 kb on + strand at 288.375 kb on - strand at 288.375 kb on - strand at 288.557 kb on + strand, within GFF2502 at 288.557 kb on + strand, within GFF2502 at 288.557 kb on + strand, within GFF2502 at 288.557 kb on + strand, within GFF2502 at 288.557 kb on + strand, within GFF2502 at 288.557 kb on + strand, within GFF2502 at 288.557 kb on + strand, within GFF2502 at 288.557 kb on + strand, within GFF2502 at 288.558 kb on - strand, within GFF2502 at 288.558 kb on - strand, within GFF2502 at 288.558 kb on - strand, within GFF2502 at 288.558 kb on - strand, within GFF2502 at 288.566 kb on + strand, within GFF2502 at 288.567 kb on - strand, within GFF2502 at 288.819 kb on - strand, within GFF2502 at 288.995 kb on + strand, within GFF2502 at 289.109 kb on - strand at 289.155 kb on + strand at 289.192 kb on + strand at 289.193 kb on - strand at 289.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 286,454 + GFF2500 0.47 +0.3 286,454 + GFF2500 0.47 -0.1 286,455 - GFF2500 0.47 -0.3 286,588 + GFF2500 0.57 -0.5 286,589 - GFF2500 0.58 -0.9 286,589 - GFF2500 0.58 +0.2 286,589 - GFF2500 0.58 -0.7 286,589 - GFF2500 0.58 +0.7 286,592 + GFF2500 0.58 +0.0 286,592 + GFF2500 0.58 +0.4 286,592 + GFF2500 0.58 +0.7 286,592 + GFF2500 0.58 -0.1 286,592 + GFF2500 0.58 -1.9 286,593 - GFF2500 0.58 +0.9 286,593 - GFF2500 0.58 -1.2 287,152 + -1.5 287,153 - +1.1 287,301 + -0.4 287,301 + -1.0 287,301 + +0.3 287,302 - -0.5 287,302 - -0.3 287,302 - +0.7 287,403 - GFF2501 0.12 -0.5 287,847 + GFF2501 0.61 -1.0 287,992 + GFF2501 0.77 +0.2 288,188 - -0.7 288,261 + -0.1 288,374 + +0.3 288,375 - +0.6 288,375 - -0.7 288,557 + GFF2502 0.31 +0.8 288,557 + GFF2502 0.31 -0.7 288,557 + GFF2502 0.31 +1.3 288,557 + GFF2502 0.31 -0.7 288,557 + GFF2502 0.31 +0.7 288,557 + GFF2502 0.31 +0.3 288,557 + GFF2502 0.31 -0.1 288,557 + GFF2502 0.31 -0.0 288,558 - GFF2502 0.31 -1.1 288,558 - GFF2502 0.31 -0.0 288,558 - GFF2502 0.31 -1.3 288,558 - GFF2502 0.31 +0.4 288,566 + GFF2502 0.32 -0.9 288,567 - GFF2502 0.32 +0.4 288,819 - GFF2502 0.65 +0.4 288,995 + GFF2502 0.87 -0.0 289,109 - -0.9 289,155 + -0.6 289,192 + +0.7 289,193 - +0.4 289,193 - -0.0
Or see this region's nucleotide sequence