Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2372 and GFF2373 are separated by 6 nucleotides GFF2373 and GFF2374 are separated by 114 nucleotides
GFF2372 - hypothetical protein, at 147,325 to 148,218
GFF2372
GFF2373 - hypothetical protein, at 148,225 to 148,821
GFF2373
GFF2374 - Type I secretion system membrane fusion protein PrsE, at 148,936 to 150,297
GFF2374
Position (kb) 148
149 Strain fitness (log2 ratio) -2
-1
0
1 at 147.252 kb on + strand at 147.252 kb on + strand at 147.442 kb on + strand, within GFF2372 at 147.442 kb on + strand, within GFF2372 at 147.442 kb on + strand, within GFF2372 at 147.442 kb on + strand, within GFF2372 at 147.442 kb on + strand, within GFF2372 at 147.443 kb on - strand, within GFF2372 at 147.443 kb on - strand, within GFF2372 at 147.443 kb on - strand, within GFF2372 at 147.675 kb on + strand, within GFF2372 at 147.676 kb on - strand, within GFF2372 at 147.676 kb on - strand, within GFF2372 at 147.736 kb on + strand, within GFF2372 at 147.736 kb on + strand, within GFF2372 at 147.736 kb on + strand, within GFF2372 at 147.817 kb on + strand, within GFF2372 at 147.817 kb on + strand, within GFF2372 at 147.818 kb on - strand, within GFF2372 at 147.818 kb on - strand, within GFF2372 at 147.850 kb on + strand, within GFF2372 at 148.034 kb on - strand, within GFF2372 at 148.057 kb on + strand, within GFF2372 at 148.094 kb on + strand, within GFF2372 at 148.094 kb on + strand, within GFF2372 at 148.094 kb on + strand, within GFF2372 at 148.094 kb on + strand, within GFF2372 at 148.095 kb on - strand, within GFF2372 at 148.095 kb on - strand, within GFF2372 at 148.097 kb on + strand, within GFF2372 at 148.097 kb on + strand, within GFF2372 at 148.097 kb on + strand, within GFF2372 at 148.097 kb on + strand, within GFF2372 at 148.316 kb on + strand, within GFF2373 at 148.317 kb on - strand, within GFF2373 at 148.501 kb on + strand, within GFF2373 at 148.803 kb on + strand at 148.803 kb on + strand at 148.803 kb on + strand at 148.804 kb on - strand at 148.804 kb on - strand at 149.013 kb on + strand at 149.014 kb on - strand at 149.016 kb on + strand at 149.016 kb on + strand at 149.016 kb on + strand at 149.016 kb on + strand at 149.016 kb on + strand at 149.017 kb on - strand at 149.017 kb on - strand at 149.017 kb on - strand at 149.017 kb on - strand at 149.017 kb on - strand at 149.108 kb on + strand, within GFF2374 at 149.108 kb on + strand, within GFF2374 at 149.108 kb on + strand, within GFF2374 at 149.109 kb on - strand, within GFF2374 at 149.307 kb on + strand, within GFF2374 at 149.307 kb on + strand, within GFF2374 at 149.308 kb on - strand, within GFF2374 at 149.391 kb on + strand, within GFF2374
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 147,252 + -0.2 147,252 + -0.1 147,442 + GFF2372 0.13 -0.1 147,442 + GFF2372 0.13 +0.2 147,442 + GFF2372 0.13 -0.5 147,442 + GFF2372 0.13 +0.1 147,442 + GFF2372 0.13 +0.3 147,443 - GFF2372 0.13 -0.7 147,443 - GFF2372 0.13 +0.7 147,443 - GFF2372 0.13 +0.1 147,675 + GFF2372 0.39 -1.1 147,676 - GFF2372 0.39 -0.4 147,676 - GFF2372 0.39 -0.3 147,736 + GFF2372 0.46 -0.6 147,736 + GFF2372 0.46 -0.2 147,736 + GFF2372 0.46 +0.1 147,817 + GFF2372 0.55 -0.3 147,817 + GFF2372 0.55 +0.0 147,818 - GFF2372 0.55 -0.3 147,818 - GFF2372 0.55 -0.3 147,850 + GFF2372 0.59 -1.1 148,034 - GFF2372 0.79 +0.1 148,057 + GFF2372 0.82 -0.7 148,094 + GFF2372 0.86 +0.2 148,094 + GFF2372 0.86 +0.6 148,094 + GFF2372 0.86 +0.5 148,094 + GFF2372 0.86 +0.3 148,095 - GFF2372 0.86 +0.7 148,095 - GFF2372 0.86 +0.6 148,097 + GFF2372 0.86 +0.2 148,097 + GFF2372 0.86 -0.1 148,097 + GFF2372 0.86 -0.1 148,097 + GFF2372 0.86 -0.2 148,316 + GFF2373 0.15 -1.1 148,317 - GFF2373 0.15 +1.3 148,501 + GFF2373 0.46 -1.8 148,803 + -0.6 148,803 + +0.4 148,803 + +0.7 148,804 - -0.3 148,804 - -1.0 149,013 + +0.3 149,014 - -0.2 149,016 + +0.1 149,016 + +0.0 149,016 + +0.9 149,016 + +0.3 149,016 + +0.2 149,017 - +0.2 149,017 - -0.4 149,017 - +1.0 149,017 - -0.9 149,017 - +0.0 149,108 + GFF2374 0.13 +0.2 149,108 + GFF2374 0.13 -1.0 149,108 + GFF2374 0.13 +1.5 149,109 - GFF2374 0.13 +0.3 149,307 + GFF2374 0.27 -0.2 149,307 + GFF2374 0.27 -0.2 149,308 - GFF2374 0.27 -0.5 149,391 + GFF2374 0.33 +0.4
Or see this region's nucleotide sequence