Strain Fitness in Pseudomonas sp. DMC3 around GFF2350

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2348 and GFF2349 are separated by 3 nucleotidesGFF2349 and GFF2350 are separated by 14 nucleotidesGFF2350 and GFF2351 are separated by 49 nucleotidesGFF2351 and GFF2352 are separated by 232 nucleotides GFF2348 - Peptidyl-prolyl cis-trans isomerase A, at 125,596 to 126,159 GFF2348 GFF2349 - 3-oxoadipate enol-lactonase 2, at 126,163 to 126,966 GFF2349 GFF2350 - HTH-type transcriptional regulator YhaJ, at 126,981 to 127,904 GFF2350 GFF2351 - hypothetical protein, at 127,954 to 128,268 GFF2351 GFF2352 - FMN-dependent NADH-azoreductase, at 128,501 to 129,100 GFF2352 Position (kb) 126 127 128Strain fitness (log2 ratio) -2 -1 0 1 2at 125.990 kb on + strand, within GFF2348at 125.990 kb on + strand, within GFF2348at 125.991 kb on - strand, within GFF2348at 125.991 kb on - strand, within GFF2348at 125.991 kb on - strand, within GFF2348at 125.991 kb on - strand, within GFF2348at 126.124 kb on + strandat 126.298 kb on + strand, within GFF2349at 126.298 kb on + strand, within GFF2349at 126.298 kb on + strand, within GFF2349at 126.299 kb on - strand, within GFF2349at 126.299 kb on - strand, within GFF2349at 126.299 kb on - strand, within GFF2349at 126.302 kb on + strand, within GFF2349at 126.302 kb on + strand, within GFF2349at 126.302 kb on + strand, within GFF2349at 126.302 kb on + strand, within GFF2349at 126.303 kb on - strand, within GFF2349at 126.314 kb on - strand, within GFF2349at 126.329 kb on + strand, within GFF2349at 126.329 kb on + strand, within GFF2349at 126.329 kb on + strand, within GFF2349at 126.330 kb on - strand, within GFF2349at 126.330 kb on - strand, within GFF2349at 126.330 kb on - strand, within GFF2349at 126.616 kb on - strand, within GFF2349at 126.701 kb on + strand, within GFF2349at 126.701 kb on + strand, within GFF2349at 126.701 kb on + strand, within GFF2349at 126.701 kb on + strand, within GFF2349at 126.702 kb on - strand, within GFF2349at 126.702 kb on - strand, within GFF2349at 126.702 kb on - strand, within GFF2349at 126.770 kb on + strand, within GFF2349at 126.770 kb on + strand, within GFF2349at 126.770 kb on + strand, within GFF2349at 126.770 kb on + strand, within GFF2349at 126.770 kb on + strand, within GFF2349at 126.771 kb on - strand, within GFF2349at 126.920 kb on + strandat 126.920 kb on + strandat 126.959 kb on + strandat 126.959 kb on + strandat 126.959 kb on + strandat 126.960 kb on - strandat 126.960 kb on - strandat 127.099 kb on + strand, within GFF2350at 127.100 kb on - strand, within GFF2350at 127.789 kb on + strand, within GFF2350at 127.790 kb on - strand, within GFF2350at 127.908 kb on + strandat 127.908 kb on + strandat 127.908 kb on + strandat 127.909 kb on - strandat 127.909 kb on - strandat 127.909 kb on - strandat 127.909 kb on - strandat 127.923 kb on + strandat 127.923 kb on + strandat 127.923 kb on + strandat 127.924 kb on - strandat 127.964 kb on + strandat 128.053 kb on + strand, within GFF2351at 128.062 kb on + strand, within GFF2351at 128.063 kb on - strand, within GFF2351at 128.104 kb on + strand, within GFF2351at 128.104 kb on + strand, within GFF2351at 128.104 kb on + strand, within GFF2351at 128.104 kb on + strand, within GFF2351at 128.105 kb on - strand, within GFF2351at 128.105 kb on - strand, within GFF2351at 128.196 kb on + strand, within GFF2351at 128.197 kb on - strand, within GFF2351at 128.197 kb on - strand, within GFF2351at 128.267 kb on - strandat 128.273 kb on - strandat 128.387 kb on + strandat 128.471 kb on + strandat 128.471 kb on + strandat 128.471 kb on + strandat 128.471 kb on + strandat 128.471 kb on + strandat 128.471 kb on + strandat 128.471 kb on + strandat 128.471 kb on + strandat 128.472 kb on - strandat 128.472 kb on - strandat 128.472 kb on - strandat 128.472 kb on - strandat 128.472 kb on - strandat 128.472 kb on - strandat 128.472 kb on - strandat 128.478 kb on + strandat 128.479 kb on - strandat 128.479 kb on - strandat 128.493 kb on + strandat 128.494 kb on - strandat 128.494 kb on - strandat 128.789 kb on + strand, within GFF2352

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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125,990 + GFF2348 0.70 +0.5
125,990 + GFF2348 0.70 -1.5
125,991 - GFF2348 0.70 -1.0
125,991 - GFF2348 0.70 +0.9
125,991 - GFF2348 0.70 -1.6
125,991 - GFF2348 0.70 -1.8
126,124 + +0.2
126,298 + GFF2349 0.17 -2.0
126,298 + GFF2349 0.17 -0.0
126,298 + GFF2349 0.17 -0.7
126,299 - GFF2349 0.17 +0.2
126,299 - GFF2349 0.17 -0.8
126,299 - GFF2349 0.17 -0.5
126,302 + GFF2349 0.17 +0.4
126,302 + GFF2349 0.17 +0.0
126,302 + GFF2349 0.17 -0.3
126,302 + GFF2349 0.17 -0.8
126,303 - GFF2349 0.17 +0.0
126,314 - GFF2349 0.19 +0.8
126,329 + GFF2349 0.21 +0.0
126,329 + GFF2349 0.21 -0.4
126,329 + GFF2349 0.21 +0.5
126,330 - GFF2349 0.21 +0.1
126,330 - GFF2349 0.21 -0.7
126,330 - GFF2349 0.21 -0.1
126,616 - GFF2349 0.56 -0.1
126,701 + GFF2349 0.67 -0.4
126,701 + GFF2349 0.67 +0.2
126,701 + GFF2349 0.67 +0.1
126,701 + GFF2349 0.67 -0.5
126,702 - GFF2349 0.67 -0.0
126,702 - GFF2349 0.67 +0.6
126,702 - GFF2349 0.67 +1.3
126,770 + GFF2349 0.75 +1.3
126,770 + GFF2349 0.75 -1.1
126,770 + GFF2349 0.75 -0.4
126,770 + GFF2349 0.75 -1.3
126,770 + GFF2349 0.75 +1.3
126,771 - GFF2349 0.76 -0.9
126,920 + -0.0
126,920 + +0.7
126,959 + -0.1
126,959 + -1.5
126,959 + -1.4
126,960 - +0.2
126,960 - -0.7
127,099 + GFF2350 0.13 -1.5
127,100 - GFF2350 0.13 +0.1
127,789 + GFF2350 0.87 -1.2
127,790 - GFF2350 0.88 +0.3
127,908 + -0.5
127,908 + -0.1
127,908 + +0.5
127,909 - +0.2
127,909 - -0.1
127,909 - -1.1
127,909 - +0.7
127,923 + -0.1
127,923 + +2.3
127,923 + +0.2
127,924 - -0.1
127,964 + -0.8
128,053 + GFF2351 0.31 -1.3
128,062 + GFF2351 0.34 -0.6
128,063 - GFF2351 0.35 -0.6
128,104 + GFF2351 0.48 +0.2
128,104 + GFF2351 0.48 +0.9
128,104 + GFF2351 0.48 -0.6
128,104 + GFF2351 0.48 -0.3
128,105 - GFF2351 0.48 -1.0
128,105 - GFF2351 0.48 -0.1
128,196 + GFF2351 0.77 +0.2
128,197 - GFF2351 0.77 -1.7
128,197 - GFF2351 0.77 -0.2
128,267 - +0.4
128,273 - -0.7
128,387 + +0.7
128,471 + -0.7
128,471 + +0.3
128,471 + -0.2
128,471 + -0.2
128,471 + -0.5
128,471 + -0.2
128,471 + -0.2
128,471 + +0.1
128,472 - -0.3
128,472 - -1.5
128,472 - +0.2
128,472 - -0.3
128,472 - -0.7
128,472 - -1.8
128,472 - +0.1
128,478 + -0.2
128,479 - -0.1
128,479 - -0.3
128,493 + -0.5
128,494 - -0.4
128,494 - -0.6
128,789 + GFF2352 0.48 -0.7

Or see this region's nucleotide sequence