Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2327 and GFF2328 overlap by 4 nucleotides GFF2328 and GFF2329 overlap by 4 nucleotides GFF2329 and GFF2330 are separated by 130 nucleotides
GFF2327 - 5-oxoprolinase subunit A 3, at 100,498 to 101,250
GFF2327
GFF2328 - 5-oxoprolinase subunit B, at 101,247 to 101,951
GFF2328
GFF2329 - 5-oxoprolinase subunit C, at 101,948 to 102,871
GFF2329
GFF2330 - hypothetical protein, at 103,002 to 104,180
GFF2330
Position (kb) 101
102
103 Strain fitness (log2 ratio) -1
0
1 at 100.976 kb on - strand, within GFF2327 at 100.976 kb on - strand, within GFF2327 at 100.982 kb on + strand, within GFF2327 at 101.017 kb on + strand, within GFF2327 at 101.018 kb on - strand, within GFF2327 at 101.018 kb on - strand, within GFF2327 at 101.018 kb on - strand, within GFF2327 at 101.397 kb on + strand, within GFF2328 at 101.398 kb on - strand, within GFF2328 at 101.399 kb on + strand, within GFF2328 at 101.400 kb on - strand, within GFF2328 at 101.418 kb on + strand, within GFF2328 at 101.418 kb on + strand, within GFF2328 at 101.489 kb on + strand, within GFF2328 at 101.533 kb on - strand, within GFF2328 at 101.626 kb on - strand, within GFF2328 at 101.626 kb on - strand, within GFF2328 at 101.847 kb on + strand, within GFF2328 at 102.287 kb on + strand, within GFF2329 at 102.414 kb on - strand, within GFF2329 at 102.414 kb on - strand, within GFF2329 at 102.414 kb on - strand, within GFF2329 at 102.444 kb on + strand, within GFF2329 at 102.445 kb on - strand, within GFF2329 at 102.670 kb on - strand, within GFF2329 at 102.670 kb on - strand, within GFF2329 at 102.802 kb on - strand at 102.802 kb on - strand at 102.846 kb on - strand at 102.869 kb on + strand at 102.870 kb on - strand at 103.055 kb on - strand at 103.100 kb on + strand at 103.100 kb on + strand at 103.100 kb on + strand at 103.100 kb on + strand at 103.100 kb on + strand at 103.101 kb on - strand at 103.101 kb on - strand at 103.101 kb on - strand at 103.101 kb on - strand at 103.101 kb on - strand at 103.102 kb on + strand at 103.102 kb on + strand at 103.103 kb on - strand at 103.151 kb on - strand, within GFF2330 at 103.151 kb on - strand, within GFF2330 at 103.180 kb on + strand, within GFF2330 at 103.180 kb on + strand, within GFF2330 at 103.273 kb on + strand, within GFF2330 at 103.274 kb on - strand, within GFF2330 at 103.274 kb on - strand, within GFF2330 at 103.375 kb on + strand, within GFF2330 at 103.375 kb on + strand, within GFF2330 at 103.381 kb on + strand, within GFF2330 at 103.381 kb on + strand, within GFF2330 at 103.382 kb on - strand, within GFF2330 at 103.382 kb on - strand, within GFF2330 at 103.382 kb on - strand, within GFF2330 at 103.669 kb on + strand, within GFF2330 at 103.669 kb on + strand, within GFF2330
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 100,976 - GFF2327 0.63 +0.6 100,976 - GFF2327 0.63 +0.0 100,982 + GFF2327 0.64 -1.4 101,017 + GFF2327 0.69 +0.3 101,018 - GFF2327 0.69 +1.3 101,018 - GFF2327 0.69 -0.3 101,018 - GFF2327 0.69 +0.4 101,397 + GFF2328 0.21 +0.7 101,398 - GFF2328 0.21 -0.5 101,399 + GFF2328 0.22 -0.7 101,400 - GFF2328 0.22 -0.8 101,418 + GFF2328 0.24 -0.0 101,418 + GFF2328 0.24 +0.2 101,489 + GFF2328 0.34 +1.4 101,533 - GFF2328 0.41 -0.4 101,626 - GFF2328 0.54 -0.1 101,626 - GFF2328 0.54 +0.1 101,847 + GFF2328 0.85 -1.1 102,287 + GFF2329 0.37 -0.3 102,414 - GFF2329 0.50 -0.2 102,414 - GFF2329 0.50 -0.1 102,414 - GFF2329 0.50 -0.7 102,444 + GFF2329 0.54 -0.9 102,445 - GFF2329 0.54 +0.3 102,670 - GFF2329 0.78 +0.7 102,670 - GFF2329 0.78 -0.2 102,802 - +0.3 102,802 - -0.3 102,846 - +0.0 102,869 + +0.1 102,870 - -0.6 103,055 - +1.1 103,100 + -0.1 103,100 + -1.1 103,100 + -1.1 103,100 + +0.3 103,100 + +0.9 103,101 - +0.3 103,101 - +0.5 103,101 - +0.0 103,101 - +1.3 103,101 - +1.0 103,102 + +0.7 103,102 + -0.1 103,103 - -1.5 103,151 - GFF2330 0.13 -0.2 103,151 - GFF2330 0.13 -1.3 103,180 + GFF2330 0.15 -0.5 103,180 + GFF2330 0.15 +1.3 103,273 + GFF2330 0.23 +0.0 103,274 - GFF2330 0.23 -0.3 103,274 - GFF2330 0.23 +0.2 103,375 + GFF2330 0.32 -0.2 103,375 + GFF2330 0.32 -0.9 103,381 + GFF2330 0.32 -0.1 103,381 + GFF2330 0.32 -0.5 103,382 - GFF2330 0.32 -0.6 103,382 - GFF2330 0.32 -0.8 103,382 - GFF2330 0.32 -0.2 103,669 + GFF2330 0.57 -0.0 103,669 + GFF2330 0.57 -0.0
Or see this region's nucleotide sequence