Strain Fitness in Pseudomonas sp. DMC3 around GFF229

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF228 and GFF229 overlap by 1 nucleotidesGFF229 and GFF230 are separated by 65 nucleotides GFF228 - hypothetical protein, at 255,246 to 256,736 GFF228 GFF229 - Ribosomal RNA small subunit methyltransferase D, at 256,736 to 257,350 GFF229 GFF230 - hypothetical protein, at 257,416 to 258,411 GFF230 Position (kb) 256 257 258Strain fitness (log2 ratio) -2 -1 0 1at 255.879 kb on + strand, within GFF228at 255.894 kb on + strand, within GFF228at 255.894 kb on + strand, within GFF228at 255.895 kb on - strand, within GFF228at 255.975 kb on + strand, within GFF228at 255.976 kb on - strand, within GFF228at 256.197 kb on + strand, within GFF228at 256.198 kb on - strand, within GFF228at 256.291 kb on - strand, within GFF228at 256.299 kb on + strand, within GFF228at 256.300 kb on - strand, within GFF228at 256.533 kb on + strand, within GFF228at 256.533 kb on + strand, within GFF228at 256.533 kb on + strand, within GFF228at 256.534 kb on - strand, within GFF228at 256.534 kb on - strand, within GFF228at 256.534 kb on - strand, within GFF228at 256.534 kb on - strand, within GFF228at 256.536 kb on - strand, within GFF228at 256.551 kb on + strand, within GFF228at 256.551 kb on + strand, within GFF228at 256.682 kb on - strandat 256.697 kb on + strandat 256.734 kb on + strandat 256.734 kb on + strandat 256.907 kb on + strand, within GFF229at 256.907 kb on + strand, within GFF229at 256.907 kb on + strand, within GFF229at 257.179 kb on + strand, within GFF229at 257.180 kb on - strand, within GFF229at 257.180 kb on - strand, within GFF229at 257.225 kb on + strand, within GFF229at 257.226 kb on - strand, within GFF229at 257.226 kb on - strand, within GFF229at 257.312 kb on + strandat 257.402 kb on + strandat 257.644 kb on + strand, within GFF230at 257.644 kb on + strand, within GFF230at 257.644 kb on + strand, within GFF230at 257.645 kb on - strand, within GFF230at 257.645 kb on - strand, within GFF230at 257.746 kb on + strand, within GFF230at 257.746 kb on + strand, within GFF230at 257.746 kb on + strand, within GFF230at 257.747 kb on - strand, within GFF230at 257.747 kb on - strand, within GFF230at 257.821 kb on + strand, within GFF230at 257.974 kb on + strand, within GFF230at 257.974 kb on + strand, within GFF230at 257.974 kb on + strand, within GFF230at 257.975 kb on - strand, within GFF230at 258.007 kb on + strand, within GFF230at 258.008 kb on - strand, within GFF230at 258.008 kb on - strand, within GFF230at 258.008 kb on - strand, within GFF230at 258.099 kb on + strand, within GFF230at 258.099 kb on + strand, within GFF230at 258.099 kb on + strand, within GFF230at 258.099 kb on + strand, within GFF230at 258.099 kb on + strand, within GFF230at 258.099 kb on + strand, within GFF230at 258.099 kb on + strand, within GFF230at 258.099 kb on + strand, within GFF230at 258.100 kb on - strand, within GFF230at 258.100 kb on - strand, within GFF230at 258.163 kb on + strand, within GFF230at 258.163 kb on + strand, within GFF230at 258.164 kb on - strand, within GFF230at 258.164 kb on - strand, within GFF230at 258.188 kb on - strand, within GFF230at 258.190 kb on + strand, within GFF230at 258.190 kb on + strand, within GFF230at 258.190 kb on + strand, within GFF230at 258.191 kb on - strand, within GFF230at 258.191 kb on - strand, within GFF230

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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255,879 + GFF228 0.42 -0.6
255,894 + GFF228 0.43 +0.2
255,894 + GFF228 0.43 +0.9
255,895 - GFF228 0.44 +0.7
255,975 + GFF228 0.49 +0.7
255,976 - GFF228 0.49 -1.3
256,197 + GFF228 0.64 -1.9
256,198 - GFF228 0.64 -0.3
256,291 - GFF228 0.70 -0.5
256,299 + GFF228 0.71 -0.2
256,300 - GFF228 0.71 +1.0
256,533 + GFF228 0.86 -0.5
256,533 + GFF228 0.86 +0.5
256,533 + GFF228 0.86 -0.2
256,534 - GFF228 0.86 +0.2
256,534 - GFF228 0.86 -0.5
256,534 - GFF228 0.86 +0.8
256,534 - GFF228 0.86 -0.7
256,536 - GFF228 0.87 -0.2
256,551 + GFF228 0.88 +0.5
256,551 + GFF228 0.88 +0.3
256,682 - -0.3
256,697 + -1.8
256,734 + -1.3
256,734 + +0.9
256,907 + GFF229 0.28 -0.8
256,907 + GFF229 0.28 -1.0
256,907 + GFF229 0.28 -1.8
257,179 + GFF229 0.72 -0.8
257,180 - GFF229 0.72 -0.4
257,180 - GFF229 0.72 +1.7
257,225 + GFF229 0.80 -1.7
257,226 - GFF229 0.80 -1.4
257,226 - GFF229 0.80 -1.8
257,312 + -1.6
257,402 + -0.7
257,644 + GFF230 0.23 -0.3
257,644 + GFF230 0.23 +0.2
257,644 + GFF230 0.23 -0.3
257,645 - GFF230 0.23 -1.7
257,645 - GFF230 0.23 -0.1
257,746 + GFF230 0.33 +0.7
257,746 + GFF230 0.33 +0.5
257,746 + GFF230 0.33 -0.1
257,747 - GFF230 0.33 -0.1
257,747 - GFF230 0.33 -0.2
257,821 + GFF230 0.41 -0.2
257,974 + GFF230 0.56 -0.3
257,974 + GFF230 0.56 +0.3
257,974 + GFF230 0.56 -1.6
257,975 - GFF230 0.56 -0.3
258,007 + GFF230 0.59 -0.1
258,008 - GFF230 0.59 -0.8
258,008 - GFF230 0.59 +0.7
258,008 - GFF230 0.59 -0.1
258,099 + GFF230 0.69 +0.6
258,099 + GFF230 0.69 -0.9
258,099 + GFF230 0.69 -0.2
258,099 + GFF230 0.69 -0.4
258,099 + GFF230 0.69 -0.4
258,099 + GFF230 0.69 -1.5
258,099 + GFF230 0.69 -0.6
258,099 + GFF230 0.69 +0.1
258,100 - GFF230 0.69 -0.4
258,100 - GFF230 0.69 -0.1
258,163 + GFF230 0.75 +0.8
258,163 + GFF230 0.75 +0.2
258,164 - GFF230 0.75 -0.4
258,164 - GFF230 0.75 +0.3
258,188 - GFF230 0.78 -2.7
258,190 + GFF230 0.78 -0.1
258,190 + GFF230 0.78 +0.5
258,190 + GFF230 0.78 -0.3
258,191 - GFF230 0.78 +0.2
258,191 - GFF230 0.78 -0.4

Or see this region's nucleotide sequence