Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2287 and GFF2288 are separated by 6 nucleotides GFF2288 and GFF2289 are separated by 28 nucleotides GFF2289 and GFF2290 are separated by 294 nucleotides
GFF2287 - Outer membrane protein assembly factor BamC, at 65,408 to 66,523
GFF2287
GFF2288 - Putative metallo-hydrolase YycJ, at 66,530 to 67,291
GFF2288
GFF2289 - Phosphoribosylaminoimidazole-succinocarboxamide synthase, at 67,320 to 68,033
GFF2289
GFF2290 - putative chromate transport protein, at 68,328 to 69,683
GFF2290
Position (kb) 67
68
69 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 66.487 kb on + strand at 66.592 kb on + strand at 66.592 kb on + strand at 66.592 kb on + strand at 66.593 kb on - strand at 66.596 kb on + strand at 66.596 kb on + strand at 66.596 kb on + strand at 66.596 kb on + strand at 66.596 kb on + strand at 66.596 kb on + strand at 66.596 kb on + strand at 66.596 kb on + strand at 66.596 kb on + strand at 66.597 kb on - strand at 66.597 kb on - strand at 66.597 kb on - strand at 66.597 kb on - strand at 66.597 kb on - strand at 66.597 kb on - strand at 66.597 kb on - strand at 66.730 kb on - strand, within GFF2288 at 66.758 kb on + strand, within GFF2288 at 66.758 kb on + strand, within GFF2288 at 66.899 kb on + strand, within GFF2288 at 66.899 kb on + strand, within GFF2288 at 67.053 kb on - strand, within GFF2288 at 67.299 kb on - strand at 67.302 kb on + strand at 67.302 kb on + strand at 67.303 kb on - strand at 67.303 kb on - strand at 67.303 kb on - strand at 67.303 kb on - strand at 67.366 kb on - strand at 67.460 kb on + strand, within GFF2289 at 67.520 kb on + strand, within GFF2289 at 67.601 kb on + strand, within GFF2289 at 67.601 kb on + strand, within GFF2289 at 67.605 kb on + strand, within GFF2289 at 67.606 kb on - strand, within GFF2289 at 67.666 kb on - strand, within GFF2289 at 67.996 kb on - strand at 68.032 kb on - strand at 68.052 kb on - strand at 68.312 kb on + strand at 68.312 kb on + strand at 68.313 kb on - strand at 68.313 kb on - strand at 68.313 kb on - strand at 68.313 kb on - strand at 68.313 kb on - strand at 68.366 kb on + strand at 68.366 kb on + strand at 68.367 kb on - strand at 68.526 kb on + strand, within GFF2290 at 68.526 kb on + strand, within GFF2290 at 68.526 kb on + strand, within GFF2290 at 68.527 kb on - strand, within GFF2290 at 68.527 kb on - strand, within GFF2290 at 68.571 kb on + strand, within GFF2290 at 68.571 kb on + strand, within GFF2290 at 68.670 kb on + strand, within GFF2290 at 68.671 kb on - strand, within GFF2290 at 68.671 kb on - strand, within GFF2290 at 68.671 kb on - strand, within GFF2290 at 68.671 kb on - strand, within GFF2290 at 68.671 kb on - strand, within GFF2290 at 68.672 kb on + strand, within GFF2290 at 68.884 kb on - strand, within GFF2290
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 66,487 + -1.1 66,592 + +0.1 66,592 + -0.3 66,592 + -1.7 66,593 - -2.4 66,596 + -0.3 66,596 + -1.0 66,596 + -2.3 66,596 + -0.7 66,596 + -1.7 66,596 + +0.0 66,596 + -1.5 66,596 + +1.3 66,596 + +0.8 66,597 - -0.9 66,597 - -3.6 66,597 - -0.3 66,597 - -2.9 66,597 - -2.5 66,597 - -2.1 66,597 - -3.8 66,730 - GFF2288 0.26 -2.3 66,758 + GFF2288 0.30 +0.3 66,758 + GFF2288 0.30 +0.3 66,899 + GFF2288 0.48 +0.5 66,899 + GFF2288 0.48 -0.6 67,053 - GFF2288 0.69 -1.9 67,299 - -1.5 67,302 + -0.0 67,302 + -0.3 67,303 - -2.9 67,303 - -1.4 67,303 - -2.5 67,303 - -2.7 67,366 - -0.7 67,460 + GFF2289 0.20 -0.3 67,520 + GFF2289 0.28 -0.7 67,601 + GFF2289 0.39 -1.5 67,601 + GFF2289 0.39 -1.8 67,605 + GFF2289 0.40 -1.8 67,606 - GFF2289 0.40 -0.7 67,666 - GFF2289 0.48 -1.3 67,996 - -1.9 68,032 - -2.3 68,052 - -0.7 68,312 + +1.4 68,312 + +0.3 68,313 - -0.0 68,313 - +0.8 68,313 - -0.1 68,313 - -0.5 68,313 - +0.6 68,366 + -0.3 68,366 + +0.1 68,367 - +0.2 68,526 + GFF2290 0.15 -1.0 68,526 + GFF2290 0.15 +0.5 68,526 + GFF2290 0.15 -0.5 68,527 - GFF2290 0.15 +0.3 68,527 - GFF2290 0.15 +0.5 68,571 + GFF2290 0.18 +0.2 68,571 + GFF2290 0.18 +0.4 68,670 + GFF2290 0.25 -0.4 68,671 - GFF2290 0.25 +0.4 68,671 - GFF2290 0.25 -0.7 68,671 - GFF2290 0.25 -0.9 68,671 - GFF2290 0.25 -0.3 68,671 - GFF2290 0.25 -0.7 68,672 + GFF2290 0.25 -0.5 68,884 - GFF2290 0.41 +0.7
Or see this region's nucleotide sequence