Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2286 and GFF2287 are separated by 17 nucleotides GFF2287 and GFF2288 are separated by 6 nucleotides GFF2288 and GFF2289 are separated by 28 nucleotides
GFF2286 - 4-hydroxy-tetrahydrodipicolinate synthase, at 64,512 to 65,390
GFF2286
GFF2287 - Outer membrane protein assembly factor BamC, at 65,408 to 66,523
GFF2287
GFF2288 - Putative metallo-hydrolase YycJ, at 66,530 to 67,291
GFF2288
GFF2289 - Phosphoribosylaminoimidazole-succinocarboxamide synthase, at 67,320 to 68,033
GFF2289
Position (kb) 65
66
67 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 64.443 kb on + strand at 65.388 kb on + strand at 65.388 kb on + strand at 65.400 kb on + strand at 65.400 kb on + strand at 65.401 kb on - strand at 65.401 kb on - strand at 65.446 kb on + strand at 65.447 kb on - strand at 65.637 kb on - strand, within GFF2287 at 65.637 kb on - strand, within GFF2287 at 65.637 kb on - strand, within GFF2287 at 65.687 kb on + strand, within GFF2287 at 65.963 kb on + strand, within GFF2287 at 65.963 kb on + strand, within GFF2287 at 65.963 kb on + strand, within GFF2287 at 65.964 kb on - strand, within GFF2287 at 65.964 kb on - strand, within GFF2287 at 66.284 kb on + strand, within GFF2287 at 66.285 kb on - strand, within GFF2287 at 66.285 kb on - strand, within GFF2287 at 66.285 kb on - strand, within GFF2287 at 66.285 kb on - strand, within GFF2287 at 66.287 kb on + strand, within GFF2287 at 66.288 kb on - strand, within GFF2287 at 66.288 kb on - strand, within GFF2287 at 66.288 kb on - strand, within GFF2287 at 66.288 kb on - strand, within GFF2287 at 66.288 kb on - strand, within GFF2287 at 66.288 kb on - strand, within GFF2287 at 66.288 kb on - strand, within GFF2287 at 66.487 kb on + strand at 66.592 kb on + strand at 66.592 kb on + strand at 66.592 kb on + strand at 66.593 kb on - strand at 66.596 kb on + strand at 66.596 kb on + strand at 66.596 kb on + strand at 66.596 kb on + strand at 66.596 kb on + strand at 66.596 kb on + strand at 66.596 kb on + strand at 66.596 kb on + strand at 66.596 kb on + strand at 66.597 kb on - strand at 66.597 kb on - strand at 66.597 kb on - strand at 66.597 kb on - strand at 66.597 kb on - strand at 66.597 kb on - strand at 66.597 kb on - strand at 66.730 kb on - strand, within GFF2288 at 66.758 kb on + strand, within GFF2288 at 66.758 kb on + strand, within GFF2288 at 66.899 kb on + strand, within GFF2288 at 66.899 kb on + strand, within GFF2288 at 67.053 kb on - strand, within GFF2288 at 67.299 kb on - strand at 67.302 kb on + strand at 67.302 kb on + strand at 67.303 kb on - strand at 67.303 kb on - strand at 67.303 kb on - strand at 67.303 kb on - strand at 67.366 kb on - strand at 67.460 kb on + strand, within GFF2289 at 67.520 kb on + strand, within GFF2289
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 64,443 + +0.2 65,388 + +0.3 65,388 + -1.2 65,400 + -1.3 65,400 + -0.5 65,401 - -2.0 65,401 - -1.2 65,446 + -1.9 65,447 - -0.7 65,637 - GFF2287 0.21 -0.7 65,637 - GFF2287 0.21 -0.3 65,637 - GFF2287 0.21 -1.0 65,687 + GFF2287 0.25 -0.1 65,963 + GFF2287 0.50 -0.3 65,963 + GFF2287 0.50 +0.4 65,963 + GFF2287 0.50 -1.7 65,964 - GFF2287 0.50 -2.0 65,964 - GFF2287 0.50 -1.1 66,284 + GFF2287 0.78 -0.3 66,285 - GFF2287 0.79 -2.9 66,285 - GFF2287 0.79 -3.2 66,285 - GFF2287 0.79 -1.5 66,285 - GFF2287 0.79 -2.4 66,287 + GFF2287 0.79 -1.0 66,288 - GFF2287 0.79 -1.7 66,288 - GFF2287 0.79 -2.4 66,288 - GFF2287 0.79 -3.7 66,288 - GFF2287 0.79 -2.9 66,288 - GFF2287 0.79 -4.3 66,288 - GFF2287 0.79 -0.7 66,288 - GFF2287 0.79 -3.0 66,487 + -1.1 66,592 + +0.1 66,592 + -0.3 66,592 + -1.7 66,593 - -2.4 66,596 + -0.3 66,596 + -1.0 66,596 + -2.3 66,596 + -0.7 66,596 + -1.7 66,596 + +0.0 66,596 + -1.5 66,596 + +1.3 66,596 + +0.8 66,597 - -0.9 66,597 - -3.6 66,597 - -0.3 66,597 - -2.9 66,597 - -2.5 66,597 - -2.1 66,597 - -3.8 66,730 - GFF2288 0.26 -2.3 66,758 + GFF2288 0.30 +0.3 66,758 + GFF2288 0.30 +0.3 66,899 + GFF2288 0.48 +0.5 66,899 + GFF2288 0.48 -0.6 67,053 - GFF2288 0.69 -1.9 67,299 - -1.5 67,302 + -0.0 67,302 + -0.3 67,303 - -2.9 67,303 - -1.4 67,303 - -2.5 67,303 - -2.7 67,366 - -0.7 67,460 + GFF2289 0.20 -0.3 67,520 + GFF2289 0.28 -0.7
Or see this region's nucleotide sequence