Strain Fitness in Pseudomonas sp. DMC3 around GFF2282

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2281 and GFF2282 are separated by 98 nucleotidesGFF2282 and GFF2283 are separated by 31 nucleotides GFF2281 - Beta-barrel assembly-enhancing protease, at 60,145 to 61,578 GFF2281 GFF2282 - Sulfur carrier protein TusA, at 61,677 to 61,916 GFF2282 GFF2283 - hypothetical protein, at 61,948 to 63,018 GFF2283 Position (kb) 61 62Strain fitness (log2 ratio) -2 -1 0 1 2at 60.749 kb on + strand, within GFF2281at 61.218 kb on - strand, within GFF2281at 61.218 kb on - strand, within GFF2281at 61.364 kb on + strand, within GFF2281at 61.364 kb on + strand, within GFF2281at 61.364 kb on + strand, within GFF2281at 61.365 kb on - strand, within GFF2281at 61.365 kb on - strand, within GFF2281at 61.382 kb on + strand, within GFF2281at 61.382 kb on + strand, within GFF2281at 61.382 kb on + strand, within GFF2281at 61.383 kb on - strand, within GFF2281at 61.458 kb on - strandat 61.458 kb on - strandat 61.561 kb on - strandat 61.606 kb on + strandat 61.606 kb on + strandat 61.607 kb on - strandat 61.639 kb on - strandat 61.639 kb on - strandat 61.643 kb on + strandat 61.833 kb on - strand, within GFF2282at 61.981 kb on + strandat 61.981 kb on + strandat 62.095 kb on + strand, within GFF2283at 62.294 kb on + strand, within GFF2283at 62.295 kb on - strand, within GFF2283at 62.295 kb on - strand, within GFF2283at 62.440 kb on + strand, within GFF2283at 62.440 kb on + strand, within GFF2283at 62.440 kb on + strand, within GFF2283at 62.441 kb on - strand, within GFF2283at 62.441 kb on - strand, within GFF2283at 62.441 kb on - strand, within GFF2283at 62.441 kb on - strand, within GFF2283at 62.516 kb on - strand, within GFF2283at 62.516 kb on - strand, within GFF2283at 62.581 kb on + strand, within GFF2283at 62.581 kb on + strand, within GFF2283at 62.581 kb on + strand, within GFF2283at 62.582 kb on - strand, within GFF2283at 62.582 kb on - strand, within GFF2283at 62.582 kb on - strand, within GFF2283at 62.585 kb on + strand, within GFF2283at 62.585 kb on + strand, within GFF2283at 62.585 kb on + strand, within GFF2283at 62.585 kb on + strand, within GFF2283at 62.585 kb on + strand, within GFF2283at 62.585 kb on + strand, within GFF2283at 62.586 kb on - strand, within GFF2283at 62.586 kb on - strand, within GFF2283at 62.586 kb on - strand, within GFF2283at 62.630 kb on - strand, within GFF2283at 62.630 kb on - strand, within GFF2283at 62.630 kb on - strand, within GFF2283at 62.630 kb on - strand, within GFF2283at 62.660 kb on - strand, within GFF2283at 62.660 kb on - strand, within GFF2283at 62.708 kb on - strand, within GFF2283at 62.708 kb on - strand, within GFF2283at 62.785 kb on + strand, within GFF2283at 62.786 kb on - strand, within GFF2283at 62.786 kb on - strand, within GFF2283at 62.801 kb on - strand, within GFF2283

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
60,749 + GFF2281 0.42 -0.3
61,218 - GFF2281 0.75 -0.9
61,218 - GFF2281 0.75 -0.5
61,364 + GFF2281 0.85 +0.5
61,364 + GFF2281 0.85 +0.2
61,364 + GFF2281 0.85 +0.1
61,365 - GFF2281 0.85 -0.6
61,365 - GFF2281 0.85 +0.4
61,382 + GFF2281 0.86 -0.6
61,382 + GFF2281 0.86 +0.6
61,382 + GFF2281 0.86 +0.4
61,383 - GFF2281 0.86 +0.2
61,458 - -0.4
61,458 - -0.6
61,561 - -0.3
61,606 + -1.3
61,606 + -0.3
61,607 - +0.7
61,639 - +0.6
61,639 - -0.1
61,643 + -0.7
61,833 - GFF2282 0.65 -0.8
61,981 + -2.4
61,981 + +0.3
62,095 + GFF2283 0.14 +1.7
62,294 + GFF2283 0.32 +1.1
62,295 - GFF2283 0.32 +0.0
62,295 - GFF2283 0.32 -1.0
62,440 + GFF2283 0.46 +0.7
62,440 + GFF2283 0.46 +1.3
62,440 + GFF2283 0.46 -0.3
62,441 - GFF2283 0.46 +0.7
62,441 - GFF2283 0.46 -0.3
62,441 - GFF2283 0.46 -1.3
62,441 - GFF2283 0.46 +1.0
62,516 - GFF2283 0.53 +0.0
62,516 - GFF2283 0.53 -0.1
62,581 + GFF2283 0.59 -0.5
62,581 + GFF2283 0.59 +0.3
62,581 + GFF2283 0.59 +0.2
62,582 - GFF2283 0.59 -0.7
62,582 - GFF2283 0.59 +0.7
62,582 - GFF2283 0.59 +0.2
62,585 + GFF2283 0.59 -1.6
62,585 + GFF2283 0.59 +0.1
62,585 + GFF2283 0.59 +2.3
62,585 + GFF2283 0.59 -1.4
62,585 + GFF2283 0.59 -0.3
62,585 + GFF2283 0.59 -0.5
62,586 - GFF2283 0.60 -0.1
62,586 - GFF2283 0.60 -0.2
62,586 - GFF2283 0.60 +0.3
62,630 - GFF2283 0.64 +0.0
62,630 - GFF2283 0.64 -0.1
62,630 - GFF2283 0.64 +0.1
62,630 - GFF2283 0.64 +0.3
62,660 - GFF2283 0.66 +0.4
62,660 - GFF2283 0.66 -0.0
62,708 - GFF2283 0.71 +0.1
62,708 - GFF2283 0.71 -0.0
62,785 + GFF2283 0.78 +0.2
62,786 - GFF2283 0.78 -0.5
62,786 - GFF2283 0.78 -0.3
62,801 - GFF2283 0.80 +0.2

Or see this region's nucleotide sequence