Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2279 and GFF2280 are separated by 208 nucleotides GFF2280 and GFF2281 are separated by 80 nucleotides
GFF2279 - Sigma factor AlgU regulatory protein MucB, at 57,457 to 58,422
GFF2279
GFF2280 - Periplasmic serine endoprotease DegP, at 58,631 to 60,064
GFF2280
GFF2281 - Beta-barrel assembly-enhancing protease, at 60,145 to 61,578
GFF2281
Position (kb) 58
59
60
61 Strain fitness (log2 ratio) -1
0
1 at 57.665 kb on + strand, within GFF2279 at 57.714 kb on + strand, within GFF2279 at 57.714 kb on + strand, within GFF2279 at 57.945 kb on - strand, within GFF2279 at 58.195 kb on + strand, within GFF2279 at 58.195 kb on + strand, within GFF2279 at 58.196 kb on - strand, within GFF2279 at 58.196 kb on - strand, within GFF2279 at 58.196 kb on - strand, within GFF2279 at 58.309 kb on - strand, within GFF2279 at 58.309 kb on - strand, within GFF2279 at 58.389 kb on + strand at 58.390 kb on - strand at 58.510 kb on + strand at 58.511 kb on - strand at 58.630 kb on + strand at 58.630 kb on + strand at 58.631 kb on - strand at 58.631 kb on - strand at 58.631 kb on - strand at 58.631 kb on - strand at 58.631 kb on - strand at 58.631 kb on - strand at 58.631 kb on - strand at 58.631 kb on - strand at 58.656 kb on - strand at 58.961 kb on + strand, within GFF2280 at 58.961 kb on + strand, within GFF2280 at 58.961 kb on + strand, within GFF2280 at 58.961 kb on + strand, within GFF2280 at 58.962 kb on - strand, within GFF2280 at 58.962 kb on - strand, within GFF2280 at 58.962 kb on - strand, within GFF2280 at 59.243 kb on + strand, within GFF2280 at 59.244 kb on - strand, within GFF2280 at 59.244 kb on - strand, within GFF2280 at 59.345 kb on + strand, within GFF2280 at 59.346 kb on - strand, within GFF2280 at 59.840 kb on + strand, within GFF2280 at 59.841 kb on - strand, within GFF2280 at 60.062 kb on + strand at 60.062 kb on + strand at 60.168 kb on + strand at 60.168 kb on + strand at 60.169 kb on - strand at 60.169 kb on - strand at 60.479 kb on + strand, within GFF2281 at 60.479 kb on + strand, within GFF2281 at 60.480 kb on - strand, within GFF2281 at 60.498 kb on + strand, within GFF2281 at 60.499 kb on - strand, within GFF2281 at 60.499 kb on - strand, within GFF2281 at 60.575 kb on + strand, within GFF2281 at 60.575 kb on + strand, within GFF2281 at 60.576 kb on - strand, within GFF2281 at 60.576 kb on - strand, within GFF2281 at 60.576 kb on - strand, within GFF2281 at 60.576 kb on - strand, within GFF2281 at 60.576 kb on - strand, within GFF2281 at 60.576 kb on - strand, within GFF2281 at 60.576 kb on - strand, within GFF2281 at 60.749 kb on + strand, within GFF2281
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 57,665 + GFF2279 0.22 +0.6 57,714 + GFF2279 0.27 -1.3 57,714 + GFF2279 0.27 +1.2 57,945 - GFF2279 0.51 -0.6 58,195 + GFF2279 0.76 +1.0 58,195 + GFF2279 0.76 -0.7 58,196 - GFF2279 0.77 +0.4 58,196 - GFF2279 0.77 +0.4 58,196 - GFF2279 0.77 -0.2 58,309 - GFF2279 0.88 +0.2 58,309 - GFF2279 0.88 -0.5 58,389 + -0.9 58,390 - -0.7 58,510 + +1.0 58,511 - -1.3 58,630 + +0.9 58,630 + -0.2 58,631 - +0.7 58,631 - -0.2 58,631 - +0.9 58,631 - +0.1 58,631 - -0.3 58,631 - +0.5 58,631 - -0.2 58,631 - +0.7 58,656 - +0.1 58,961 + GFF2280 0.23 -1.5 58,961 + GFF2280 0.23 +0.7 58,961 + GFF2280 0.23 +0.1 58,961 + GFF2280 0.23 -1.3 58,962 - GFF2280 0.23 -0.7 58,962 - GFF2280 0.23 +0.1 58,962 - GFF2280 0.23 -0.9 59,243 + GFF2280 0.43 -1.1 59,244 - GFF2280 0.43 -1.5 59,244 - GFF2280 0.43 -0.5 59,345 + GFF2280 0.50 -1.3 59,346 - GFF2280 0.50 -0.8 59,840 + GFF2280 0.84 -0.2 59,841 - GFF2280 0.84 +0.2 60,062 + +0.1 60,062 + -0.7 60,168 + -0.5 60,168 + -0.7 60,169 - +0.1 60,169 - +0.2 60,479 + GFF2281 0.23 -1.0 60,479 + GFF2281 0.23 -0.4 60,480 - GFF2281 0.23 +1.4 60,498 + GFF2281 0.25 +1.0 60,499 - GFF2281 0.25 +0.3 60,499 - GFF2281 0.25 +0.1 60,575 + GFF2281 0.30 -0.2 60,575 + GFF2281 0.30 +0.3 60,576 - GFF2281 0.30 -1.0 60,576 - GFF2281 0.30 +0.2 60,576 - GFF2281 0.30 -0.2 60,576 - GFF2281 0.30 -0.2 60,576 - GFF2281 0.30 +0.2 60,576 - GFF2281 0.30 -0.2 60,576 - GFF2281 0.30 +0.8 60,749 + GFF2281 0.42 -0.3
Or see this region's nucleotide sequence