Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2193 and GFF2194 are separated by 239 nucleotides GFF2194 and GFF2195 are separated by 94 nucleotides GFF2195 and GFF2196 are separated by 149 nucleotides
GFF2193 - RNA polymerase-associated protein RapA, at 442,423 to 445,269
GFF2193
GFF2194 - hypothetical protein, at 445,509 to 445,850
GFF2194
GFF2195 - hypothetical protein, at 445,945 to 446,106
GFF2195
GFF2196 - hypothetical protein, at 446,256 to 446,369
GFF2196
Position (kb) 445
446 Strain fitness (log2 ratio) -2
-1
0
1 at 444.733 kb on + strand, within GFF2193 at 444.733 kb on + strand, within GFF2193 at 444.733 kb on + strand, within GFF2193 at 444.733 kb on + strand, within GFF2193 at 444.752 kb on - strand, within GFF2193 at 444.752 kb on - strand, within GFF2193 at 444.765 kb on + strand, within GFF2193 at 444.881 kb on + strand, within GFF2193 at 444.882 kb on - strand, within GFF2193 at 445.016 kb on + strand at 445.017 kb on - strand at 445.301 kb on + strand at 445.306 kb on + strand at 445.338 kb on - strand at 445.338 kb on - strand at 445.357 kb on + strand at 445.358 kb on - strand at 445.358 kb on - strand at 445.506 kb on + strand at 445.506 kb on + strand at 445.506 kb on + strand at 445.506 kb on + strand at 445.506 kb on + strand at 445.506 kb on + strand at 445.506 kb on + strand at 445.506 kb on + strand at 445.506 kb on + strand at 445.506 kb on + strand at 445.506 kb on + strand at 445.506 kb on + strand at 445.507 kb on - strand at 445.507 kb on - strand at 445.507 kb on - strand at 445.507 kb on - strand at 445.507 kb on - strand at 445.507 kb on - strand at 445.507 kb on - strand at 445.507 kb on - strand at 445.507 kb on - strand at 445.507 kb on - strand at 445.507 kb on - strand at 445.508 kb on + strand at 445.508 kb on + strand at 445.508 kb on + strand at 445.508 kb on + strand at 445.508 kb on + strand at 445.508 kb on + strand at 445.508 kb on + strand at 445.508 kb on + strand at 445.508 kb on + strand at 445.509 kb on - strand at 445.509 kb on - strand at 445.509 kb on - strand at 445.509 kb on - strand at 445.509 kb on - strand at 445.509 kb on - strand at 445.509 kb on - strand at 445.509 kb on - strand at 445.509 kb on - strand at 445.509 kb on - strand at 445.509 kb on - strand at 445.509 kb on - strand at 445.509 kb on - strand at 445.804 kb on + strand, within GFF2194 at 446.152 kb on + strand at 446.187 kb on + strand at 446.187 kb on + strand at 446.187 kb on + strand at 446.187 kb on + strand at 446.188 kb on - strand at 446.188 kb on - strand at 446.188 kb on - strand at 446.188 kb on - strand at 446.354 kb on + strand, within GFF2196
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 444,733 + GFF2193 0.81 +0.5 444,733 + GFF2193 0.81 -0.0 444,733 + GFF2193 0.81 -0.4 444,733 + GFF2193 0.81 -0.7 444,752 - GFF2193 0.82 -1.1 444,752 - GFF2193 0.82 -1.0 444,765 + GFF2193 0.82 +0.1 444,881 + GFF2193 0.86 -0.6 444,882 - GFF2193 0.86 +1.3 445,016 + -0.1 445,017 - +0.3 445,301 + -0.1 445,306 + -0.2 445,338 - -0.6 445,338 - +0.6 445,357 + +0.3 445,358 - -1.0 445,358 - -1.0 445,506 + -0.8 445,506 + -0.2 445,506 + +1.3 445,506 + -1.0 445,506 + +0.0 445,506 + -0.3 445,506 + -0.1 445,506 + -0.9 445,506 + -0.2 445,506 + -1.7 445,506 + -0.6 445,506 + -0.4 445,507 - +0.4 445,507 - +0.2 445,507 - -1.4 445,507 - -0.0 445,507 - +0.3 445,507 - +0.0 445,507 - -1.3 445,507 - -1.8 445,507 - -0.7 445,507 - -0.2 445,507 - -0.5 445,508 + +0.9 445,508 + -1.1 445,508 + -0.1 445,508 + +0.2 445,508 + -0.8 445,508 + +0.4 445,508 + -0.5 445,508 + -1.7 445,508 + -0.6 445,509 - -0.3 445,509 - +0.5 445,509 - -0.5 445,509 - -1.0 445,509 - +0.0 445,509 - +0.6 445,509 - -0.2 445,509 - -1.0 445,509 - +0.3 445,509 - +0.0 445,509 - -0.2 445,509 - -0.0 445,509 - -2.1 445,804 + GFF2194 0.86 -0.7 446,152 + -1.4 446,187 + +0.3 446,187 + -0.1 446,187 + -0.6 446,187 + -1.0 446,188 - -2.0 446,188 - +0.5 446,188 - -2.0 446,188 - -1.5 446,354 + GFF2196 0.86 -0.2
Or see this region's nucleotide sequence