Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2159 and GFF2160 are separated by 200 nucleotides GFF2160 and GFF2161 are separated by 99 nucleotides GFF2161 and GFF2162 are separated by 95 nucleotides
GFF2159 - hypothetical protein, at 406,480 to 407,238
GFF2159
GFF2160 - hypothetical protein, at 407,439 to 407,903
GFF2160
GFF2161 - ATP-dependent DNA helicase DinG, at 408,003 to 410,147
GFF2161
GFF2162 - hypothetical protein, at 410,243 to 412,711
GFF2162
Position (kb) 408
409
410
411 Strain fitness (log2 ratio) -2
-1
0
1 at 407.103 kb on + strand, within GFF2159 at 407.104 kb on - strand, within GFF2159 at 407.144 kb on - strand, within GFF2159 at 407.263 kb on + strand at 407.304 kb on - strand at 407.304 kb on - strand at 407.320 kb on + strand at 407.321 kb on - strand at 407.352 kb on + strand at 407.374 kb on + strand at 407.375 kb on - strand at 407.375 kb on - strand at 407.392 kb on + strand at 407.393 kb on - strand at 407.405 kb on + strand at 407.405 kb on + strand at 407.405 kb on + strand at 407.405 kb on + strand at 407.406 kb on - strand at 407.406 kb on - strand at 407.626 kb on + strand, within GFF2160 at 407.626 kb on + strand, within GFF2160 at 407.626 kb on + strand, within GFF2160 at 407.626 kb on + strand, within GFF2160 at 407.626 kb on + strand, within GFF2160 at 407.626 kb on + strand, within GFF2160 at 407.626 kb on + strand, within GFF2160 at 407.626 kb on + strand, within GFF2160 at 407.626 kb on + strand, within GFF2160 at 407.626 kb on + strand, within GFF2160 at 407.627 kb on - strand, within GFF2160 at 407.627 kb on - strand, within GFF2160 at 407.627 kb on - strand, within GFF2160 at 407.627 kb on - strand, within GFF2160 at 407.627 kb on - strand, within GFF2160 at 407.627 kb on - strand, within GFF2160 at 407.650 kb on + strand, within GFF2160 at 407.650 kb on + strand, within GFF2160 at 407.651 kb on - strand, within GFF2160 at 407.651 kb on - strand, within GFF2160 at 407.651 kb on - strand, within GFF2160 at 407.651 kb on - strand, within GFF2160 at 407.651 kb on - strand, within GFF2160 at 407.651 kb on - strand, within GFF2160 at 407.651 kb on - strand, within GFF2160 at 407.651 kb on - strand, within GFF2160 at 407.651 kb on - strand, within GFF2160 at 407.651 kb on - strand, within GFF2160 at 407.651 kb on - strand, within GFF2160 at 407.682 kb on + strand, within GFF2160 at 407.682 kb on + strand, within GFF2160 at 407.683 kb on - strand, within GFF2160 at 407.683 kb on - strand, within GFF2160 at 407.683 kb on - strand, within GFF2160 at 407.683 kb on - strand, within GFF2160 at 407.683 kb on - strand, within GFF2160 at 407.891 kb on + strand at 407.891 kb on + strand at 407.892 kb on - strand at 407.892 kb on - strand at 407.933 kb on + strand at 407.941 kb on + strand at 407.941 kb on + strand at 407.941 kb on + strand at 407.941 kb on + strand at 407.942 kb on - strand at 407.942 kb on - strand at 407.942 kb on - strand at 407.942 kb on - strand at 407.942 kb on - strand at 407.942 kb on - strand at 407.942 kb on - strand at 407.942 kb on - strand at 407.946 kb on + strand at 408.042 kb on + strand at 408.216 kb on + strand at 408.307 kb on - strand, within GFF2161 at 408.381 kb on + strand, within GFF2161 at 408.382 kb on - strand, within GFF2161 at 408.382 kb on - strand, within GFF2161 at 408.658 kb on - strand, within GFF2161 at 408.658 kb on - strand, within GFF2161 at 408.774 kb on + strand, within GFF2161 at 409.123 kb on - strand, within GFF2161 at 409.417 kb on + strand, within GFF2161 at 409.431 kb on + strand, within GFF2161 at 409.869 kb on + strand, within GFF2161 at 410.141 kb on - strand at 410.182 kb on + strand at 410.182 kb on + strand at 410.182 kb on + strand at 410.183 kb on - strand at 410.183 kb on - strand at 410.183 kb on - strand at 410.183 kb on - strand at 410.183 kb on - strand at 410.183 kb on - strand at 410.183 kb on - strand at 410.183 kb on - strand at 410.242 kb on + strand at 410.243 kb on - strand at 410.558 kb on + strand, within GFF2162 at 410.559 kb on - strand, within GFF2162 at 410.559 kb on - strand, within GFF2162 at 410.734 kb on + strand, within GFF2162 at 410.734 kb on + strand, within GFF2162 at 410.734 kb on + strand, within GFF2162 at 410.735 kb on - strand, within GFF2162 at 410.864 kb on + strand, within GFF2162 at 410.865 kb on - strand, within GFF2162 at 410.905 kb on + strand, within GFF2162 at 410.906 kb on - strand, within GFF2162 at 410.906 kb on - strand, within GFF2162 at 410.977 kb on + strand, within GFF2162 at 410.977 kb on + strand, within GFF2162 at 410.977 kb on + strand, within GFF2162 at 410.977 kb on + strand, within GFF2162 at 410.978 kb on - strand, within GFF2162 at 410.978 kb on - strand, within GFF2162 at 410.978 kb on - strand, within GFF2162 at 410.978 kb on - strand, within GFF2162 at 410.978 kb on - strand, within GFF2162 at 411.092 kb on + strand, within GFF2162 at 411.123 kb on - strand, within GFF2162 at 411.123 kb on - strand, within GFF2162 at 411.123 kb on - strand, within GFF2162
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 407,103 + GFF2159 0.82 -0.7 407,104 - GFF2159 0.82 +0.0 407,144 - GFF2159 0.87 +0.0 407,263 + -0.0 407,304 - +0.1 407,304 - +0.0 407,320 + -0.3 407,321 - +0.6 407,352 + -0.4 407,374 + -0.4 407,375 - +0.2 407,375 - -2.4 407,392 + -0.0 407,393 - -0.5 407,405 + -0.0 407,405 + -1.0 407,405 + +0.9 407,405 + -0.2 407,406 - +0.1 407,406 - +0.2 407,626 + GFF2160 0.40 +0.3 407,626 + GFF2160 0.40 +0.4 407,626 + GFF2160 0.40 +0.5 407,626 + GFF2160 0.40 +0.2 407,626 + GFF2160 0.40 +0.6 407,626 + GFF2160 0.40 -0.1 407,626 + GFF2160 0.40 +0.0 407,626 + GFF2160 0.40 -0.4 407,626 + GFF2160 0.40 -0.8 407,626 + GFF2160 0.40 -0.3 407,627 - GFF2160 0.40 -0.5 407,627 - GFF2160 0.40 +1.3 407,627 - GFF2160 0.40 +0.3 407,627 - GFF2160 0.40 -0.1 407,627 - GFF2160 0.40 +0.7 407,627 - GFF2160 0.40 -0.5 407,650 + GFF2160 0.45 +0.3 407,650 + GFF2160 0.45 -0.6 407,651 - GFF2160 0.46 +0.1 407,651 - GFF2160 0.46 -0.4 407,651 - GFF2160 0.46 -0.4 407,651 - GFF2160 0.46 -0.5 407,651 - GFF2160 0.46 +0.8 407,651 - GFF2160 0.46 +0.7 407,651 - GFF2160 0.46 -1.1 407,651 - GFF2160 0.46 -0.7 407,651 - GFF2160 0.46 +0.7 407,651 - GFF2160 0.46 -0.5 407,651 - GFF2160 0.46 -0.7 407,682 + GFF2160 0.52 +0.6 407,682 + GFF2160 0.52 -0.1 407,683 - GFF2160 0.52 -0.7 407,683 - GFF2160 0.52 +0.6 407,683 - GFF2160 0.52 -0.2 407,683 - GFF2160 0.52 +0.1 407,683 - GFF2160 0.52 -0.7 407,891 + +1.2 407,891 + -0.6 407,892 - -0.5 407,892 - -0.6 407,933 + +0.1 407,941 + +0.5 407,941 + -0.4 407,941 + +0.6 407,941 + +0.0 407,942 - +1.0 407,942 - +0.0 407,942 - -1.6 407,942 - -0.4 407,942 - +0.5 407,942 - -2.1 407,942 - -1.1 407,942 - -0.2 407,946 + +0.0 408,042 + -1.0 408,216 + -0.7 408,307 - GFF2161 0.14 -0.7 408,381 + GFF2161 0.18 -0.7 408,382 - GFF2161 0.18 -1.4 408,382 - GFF2161 0.18 -0.4 408,658 - GFF2161 0.31 -1.7 408,658 - GFF2161 0.31 -1.0 408,774 + GFF2161 0.36 -0.4 409,123 - GFF2161 0.52 -0.4 409,417 + GFF2161 0.66 -1.0 409,431 + GFF2161 0.67 -1.7 409,869 + GFF2161 0.87 -0.7 410,141 - +0.0 410,182 + -0.5 410,182 + +0.3 410,182 + +0.4 410,183 - -0.4 410,183 - -0.8 410,183 - +0.2 410,183 - -0.1 410,183 - -0.5 410,183 - +0.3 410,183 - +0.2 410,183 - -1.2 410,242 + -0.4 410,243 - -0.2 410,558 + GFF2162 0.13 +0.4 410,559 - GFF2162 0.13 -0.9 410,559 - GFF2162 0.13 +0.6 410,734 + GFF2162 0.20 +1.0 410,734 + GFF2162 0.20 +0.3 410,734 + GFF2162 0.20 -0.2 410,735 - GFF2162 0.20 +1.1 410,864 + GFF2162 0.25 -0.4 410,865 - GFF2162 0.25 -1.7 410,905 + GFF2162 0.27 -1.0 410,906 - GFF2162 0.27 -0.4 410,906 - GFF2162 0.27 -0.1 410,977 + GFF2162 0.30 -0.2 410,977 + GFF2162 0.30 -0.2 410,977 + GFF2162 0.30 -0.2 410,977 + GFF2162 0.30 -0.2 410,978 - GFF2162 0.30 +1.0 410,978 - GFF2162 0.30 +0.4 410,978 - GFF2162 0.30 -0.6 410,978 - GFF2162 0.30 +0.1 410,978 - GFF2162 0.30 +0.2 411,092 + GFF2162 0.34 -0.1 411,123 - GFF2162 0.36 +0.1 411,123 - GFF2162 0.36 +0.1 411,123 - GFF2162 0.36 -0.5
Or see this region's nucleotide sequence