Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2131 and GFF2132 are separated by 126 nucleotides GFF2132 and GFF2133 are separated by 17 nucleotides
GFF2131 - DNA polymerase IV, at 377,950 to 379,011
GFF2131
GFF2132 - hypothetical protein, at 379,138 to 380,091
GFF2132
GFF2133 - Proline--tRNA ligase, at 380,109 to 381,941
GFF2133
Position (kb) 379
380
381 Strain fitness (log2 ratio) -2
-1
0
1 at 378.143 kb on + strand, within GFF2131 at 378.180 kb on + strand, within GFF2131 at 378.191 kb on - strand, within GFF2131 at 378.216 kb on + strand, within GFF2131 at 378.216 kb on + strand, within GFF2131 at 378.217 kb on - strand, within GFF2131 at 378.217 kb on - strand, within GFF2131 at 378.233 kb on - strand, within GFF2131 at 378.233 kb on - strand, within GFF2131 at 378.700 kb on + strand, within GFF2131 at 378.889 kb on + strand, within GFF2131 at 379.009 kb on + strand at 379.010 kb on - strand at 379.010 kb on - strand at 379.022 kb on + strand at 379.030 kb on + strand at 379.031 kb on - strand at 379.031 kb on - strand at 379.079 kb on + strand at 379.079 kb on + strand at 379.079 kb on + strand at 379.079 kb on + strand at 379.079 kb on + strand at 379.079 kb on + strand at 379.079 kb on + strand at 379.079 kb on + strand at 379.080 kb on - strand at 379.080 kb on - strand at 379.080 kb on - strand at 379.080 kb on - strand at 379.080 kb on - strand at 379.097 kb on - strand at 379.132 kb on + strand at 379.133 kb on - strand at 379.140 kb on - strand at 379.140 kb on - strand at 379.162 kb on + strand at 379.340 kb on + strand, within GFF2132 at 379.592 kb on + strand, within GFF2132 at 379.592 kb on + strand, within GFF2132 at 379.697 kb on + strand, within GFF2132 at 379.697 kb on + strand, within GFF2132 at 379.697 kb on + strand, within GFF2132 at 379.698 kb on - strand, within GFF2132 at 379.698 kb on - strand, within GFF2132 at 379.698 kb on - strand, within GFF2132 at 379.808 kb on + strand, within GFF2132 at 379.809 kb on - strand, within GFF2132 at 379.829 kb on + strand, within GFF2132 at 379.830 kb on - strand, within GFF2132 at 379.847 kb on + strand, within GFF2132 at 380.071 kb on + strand at 380.100 kb on + strand at 380.101 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 378,143 + GFF2131 0.18 +0.1 378,180 + GFF2131 0.22 +0.0 378,191 - GFF2131 0.23 -0.0 378,216 + GFF2131 0.25 +0.9 378,216 + GFF2131 0.25 -1.5 378,217 - GFF2131 0.25 -0.4 378,217 - GFF2131 0.25 -0.6 378,233 - GFF2131 0.27 +0.3 378,233 - GFF2131 0.27 -0.2 378,700 + GFF2131 0.71 -0.5 378,889 + GFF2131 0.88 -0.8 379,009 + -0.7 379,010 - +0.1 379,010 - -0.2 379,022 + -0.1 379,030 + -0.1 379,031 - +0.2 379,031 - -0.3 379,079 + +0.5 379,079 + +0.0 379,079 + +0.3 379,079 + -0.5 379,079 + -0.8 379,079 + -0.9 379,079 + -1.3 379,079 + +0.2 379,080 - -1.1 379,080 - +0.4 379,080 - -0.2 379,080 - -0.4 379,080 - -0.6 379,097 - -0.7 379,132 + +0.2 379,133 - -2.2 379,140 - +0.2 379,140 - +0.1 379,162 + +1.2 379,340 + GFF2132 0.21 -0.6 379,592 + GFF2132 0.48 +0.3 379,592 + GFF2132 0.48 +0.4 379,697 + GFF2132 0.59 -1.9 379,697 + GFF2132 0.59 -1.3 379,697 + GFF2132 0.59 -0.6 379,698 - GFF2132 0.59 +0.3 379,698 - GFF2132 0.59 -0.7 379,698 - GFF2132 0.59 -1.0 379,808 + GFF2132 0.70 -1.1 379,809 - GFF2132 0.70 -0.5 379,829 + GFF2132 0.72 +0.0 379,830 - GFF2132 0.73 +0.4 379,847 + GFF2132 0.74 -0.9 380,071 + -0.8 380,100 + -0.1 380,101 - +0.6
Or see this region's nucleotide sequence