Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2109 and GFF2110 are separated by 67 nucleotides GFF2110 and GFF2111 are separated by 83 nucleotides GFF2111 and GFF2112 are separated by 8 nucleotides GFF2112 and GFF2113 are separated by 56 nucleotides
GFF2109 - hypothetical protein, at 355,349 to 355,867
GFF2109
GFF2110 - Nicotinamide-nucleotide amidohydrolase PncC, at 355,935 to 356,435
GFF2110
GFF2111 - Protein RecA, at 356,519 to 357,577
GFF2111
GFF2112 - Regulatory protein RecX, at 357,586 to 358,056
GFF2112
GFF2113 - hypothetical protein, at 358,113 to 359,228
GFF2113
Position (kb) 356
357
358 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 355.634 kb on - strand, within GFF2109 at 355.634 kb on - strand, within GFF2109 at 355.774 kb on + strand, within GFF2109 at 355.832 kb on + strand at 355.832 kb on + strand at 355.832 kb on + strand at 355.833 kb on - strand at 355.875 kb on + strand at 355.876 kb on - strand at 355.876 kb on - strand at 355.876 kb on - strand at 355.900 kb on - strand at 356.085 kb on + strand, within GFF2110 at 356.085 kb on + strand, within GFF2110 at 356.085 kb on + strand, within GFF2110 at 356.095 kb on - strand, within GFF2110 at 356.152 kb on + strand, within GFF2110 at 356.288 kb on - strand, within GFF2110 at 356.320 kb on - strand, within GFF2110 at 356.320 kb on - strand, within GFF2110 at 356.320 kb on - strand, within GFF2110 at 356.504 kb on + strand at 356.504 kb on + strand at 356.504 kb on + strand at 356.504 kb on + strand at 356.504 kb on + strand at 356.505 kb on - strand at 356.505 kb on - strand at 356.505 kb on - strand at 356.505 kb on - strand at 356.517 kb on + strand at 356.592 kb on + strand at 356.638 kb on + strand, within GFF2111 at 356.695 kb on + strand, within GFF2111 at 356.708 kb on + strand, within GFF2111 at 357.103 kb on + strand, within GFF2111 at 357.103 kb on + strand, within GFF2111 at 357.103 kb on + strand, within GFF2111 at 357.196 kb on + strand, within GFF2111 at 357.320 kb on + strand, within GFF2111 at 357.320 kb on + strand, within GFF2111 at 357.321 kb on - strand, within GFF2111 at 357.321 kb on - strand, within GFF2111 at 357.321 kb on - strand, within GFF2111 at 357.392 kb on + strand, within GFF2111 at 357.579 kb on - strand at 357.681 kb on + strand, within GFF2112 at 357.681 kb on + strand, within GFF2112 at 357.682 kb on - strand, within GFF2112 at 357.769 kb on + strand, within GFF2112 at 357.790 kb on + strand, within GFF2112 at 357.790 kb on + strand, within GFF2112 at 357.790 kb on + strand, within GFF2112 at 357.791 kb on - strand, within GFF2112 at 357.858 kb on + strand, within GFF2112 at 357.858 kb on + strand, within GFF2112 at 357.858 kb on + strand, within GFF2112 at 357.859 kb on - strand, within GFF2112 at 357.918 kb on + strand, within GFF2112 at 357.919 kb on - strand, within GFF2112 at 358.054 kb on + strand at 358.054 kb on + strand at 358.093 kb on + strand at 358.093 kb on + strand at 358.118 kb on + strand at 358.119 kb on - strand at 358.119 kb on - strand at 358.119 kb on - strand at 358.190 kb on + strand at 358.191 kb on - strand at 358.224 kb on - strand at 358.294 kb on + strand, within GFF2113 at 358.294 kb on + strand, within GFF2113 at 358.433 kb on + strand, within GFF2113 at 358.433 kb on + strand, within GFF2113 at 358.434 kb on - strand, within GFF2113 at 358.435 kb on + strand, within GFF2113 at 358.435 kb on + strand, within GFF2113 at 358.435 kb on + strand, within GFF2113 at 358.435 kb on + strand, within GFF2113 at 358.436 kb on - strand, within GFF2113 at 358.436 kb on - strand, within GFF2113 at 358.436 kb on - strand, within GFF2113 at 358.436 kb on - strand, within GFF2113 at 358.475 kb on - strand, within GFF2113 at 358.475 kb on - strand, within GFF2113 at 358.512 kb on - strand, within GFF2113 at 358.513 kb on + strand, within GFF2113 at 358.513 kb on + strand, within GFF2113 at 358.513 kb on + strand, within GFF2113 at 358.514 kb on - strand, within GFF2113
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 355,634 - GFF2109 0.55 +0.0 355,634 - GFF2109 0.55 +0.7 355,774 + GFF2109 0.82 -0.7 355,832 + -1.0 355,832 + -0.4 355,832 + +2.2 355,833 - -0.2 355,875 + +1.0 355,876 - +0.5 355,876 - -0.7 355,876 - -1.0 355,900 - -0.5 356,085 + GFF2110 0.30 +0.2 356,085 + GFF2110 0.30 +0.5 356,085 + GFF2110 0.30 +0.1 356,095 - GFF2110 0.32 +0.3 356,152 + GFF2110 0.43 +1.1 356,288 - GFF2110 0.70 -1.0 356,320 - GFF2110 0.77 +0.9 356,320 - GFF2110 0.77 +0.2 356,320 - GFF2110 0.77 +0.4 356,504 + -1.2 356,504 + -1.1 356,504 + +0.1 356,504 + +2.8 356,504 + +0.0 356,505 - +1.2 356,505 - -0.8 356,505 - +1.3 356,505 - -0.4 356,517 + +0.4 356,592 + -1.0 356,638 + GFF2111 0.11 -0.4 356,695 + GFF2111 0.17 -1.0 356,708 + GFF2111 0.18 +0.9 357,103 + GFF2111 0.55 -1.1 357,103 + GFF2111 0.55 -0.4 357,103 + GFF2111 0.55 -0.4 357,196 + GFF2111 0.64 -1.0 357,320 + GFF2111 0.76 -1.2 357,320 + GFF2111 0.76 +1.0 357,321 - GFF2111 0.76 -1.0 357,321 - GFF2111 0.76 -0.4 357,321 - GFF2111 0.76 +0.3 357,392 + GFF2111 0.82 -0.7 357,579 - -0.1 357,681 + GFF2112 0.20 -2.5 357,681 + GFF2112 0.20 -0.4 357,682 - GFF2112 0.20 +1.1 357,769 + GFF2112 0.39 -1.0 357,790 + GFF2112 0.43 +0.9 357,790 + GFF2112 0.43 +0.3 357,790 + GFF2112 0.43 +0.0 357,791 - GFF2112 0.44 -0.7 357,858 + GFF2112 0.58 +0.9 357,858 + GFF2112 0.58 +0.5 357,858 + GFF2112 0.58 +0.4 357,859 - GFF2112 0.58 -0.8 357,918 + GFF2112 0.70 -1.0 357,919 - GFF2112 0.71 -0.4 358,054 + +0.1 358,054 + +0.8 358,093 + -2.1 358,093 + +0.6 358,118 + +0.3 358,119 - -1.8 358,119 - +0.9 358,119 - -1.1 358,190 + +0.1 358,191 - +0.2 358,224 - +0.4 358,294 + GFF2113 0.16 -1.1 358,294 + GFF2113 0.16 -0.7 358,433 + GFF2113 0.29 +0.8 358,433 + GFF2113 0.29 -0.2 358,434 - GFF2113 0.29 +1.5 358,435 + GFF2113 0.29 +0.3 358,435 + GFF2113 0.29 +0.5 358,435 + GFF2113 0.29 -0.2 358,435 + GFF2113 0.29 +0.8 358,436 - GFF2113 0.29 -0.1 358,436 - GFF2113 0.29 -0.4 358,436 - GFF2113 0.29 -0.1 358,436 - GFF2113 0.29 +0.2 358,475 - GFF2113 0.32 -0.1 358,475 - GFF2113 0.32 +0.0 358,512 - GFF2113 0.36 +0.4 358,513 + GFF2113 0.36 -0.1 358,513 + GFF2113 0.36 +0.2 358,513 + GFF2113 0.36 +0.7 358,514 - GFF2113 0.36 -0.3
Or see this region's nucleotide sequence