Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2108 and GFF2109 overlap by 22 nucleotides GFF2109 and GFF2110 are separated by 67 nucleotides GFF2110 and GFF2111 are separated by 83 nucleotides
GFF2108 - hypothetical protein, at 354,804 to 355,370
GFF2108
GFF2109 - hypothetical protein, at 355,349 to 355,867
GFF2109
GFF2110 - Nicotinamide-nucleotide amidohydrolase PncC, at 355,935 to 356,435
GFF2110
GFF2111 - Protein RecA, at 356,519 to 357,577
GFF2111
Position (kb) 355
356
357 Strain fitness (log2 ratio) -1
0
1
2
3 at 354.972 kb on + strand, within GFF2108 at 354.972 kb on + strand, within GFF2108 at 354.973 kb on - strand, within GFF2108 at 355.000 kb on - strand, within GFF2108 at 355.011 kb on + strand, within GFF2108 at 355.011 kb on + strand, within GFF2108 at 355.011 kb on + strand, within GFF2108 at 355.011 kb on + strand, within GFF2108 at 355.012 kb on - strand, within GFF2108 at 355.012 kb on - strand, within GFF2108 at 355.046 kb on + strand, within GFF2108 at 355.348 kb on + strand at 355.348 kb on + strand at 355.348 kb on + strand at 355.348 kb on + strand at 355.348 kb on + strand at 355.348 kb on + strand at 355.349 kb on - strand at 355.349 kb on - strand at 355.349 kb on - strand at 355.634 kb on - strand, within GFF2109 at 355.634 kb on - strand, within GFF2109 at 355.774 kb on + strand, within GFF2109 at 355.832 kb on + strand at 355.832 kb on + strand at 355.832 kb on + strand at 355.833 kb on - strand at 355.875 kb on + strand at 355.876 kb on - strand at 355.876 kb on - strand at 355.876 kb on - strand at 355.900 kb on - strand at 356.085 kb on + strand, within GFF2110 at 356.085 kb on + strand, within GFF2110 at 356.085 kb on + strand, within GFF2110 at 356.095 kb on - strand, within GFF2110 at 356.152 kb on + strand, within GFF2110 at 356.288 kb on - strand, within GFF2110 at 356.320 kb on - strand, within GFF2110 at 356.320 kb on - strand, within GFF2110 at 356.320 kb on - strand, within GFF2110 at 356.504 kb on + strand at 356.504 kb on + strand at 356.504 kb on + strand at 356.504 kb on + strand at 356.504 kb on + strand at 356.505 kb on - strand at 356.505 kb on - strand at 356.505 kb on - strand at 356.505 kb on - strand at 356.517 kb on + strand at 356.592 kb on + strand at 356.638 kb on + strand, within GFF2111 at 356.695 kb on + strand, within GFF2111 at 356.708 kb on + strand, within GFF2111 at 357.103 kb on + strand, within GFF2111 at 357.103 kb on + strand, within GFF2111 at 357.103 kb on + strand, within GFF2111 at 357.196 kb on + strand, within GFF2111 at 357.320 kb on + strand, within GFF2111 at 357.320 kb on + strand, within GFF2111 at 357.321 kb on - strand, within GFF2111 at 357.321 kb on - strand, within GFF2111 at 357.321 kb on - strand, within GFF2111 at 357.392 kb on + strand, within GFF2111
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 354,972 + GFF2108 0.30 +0.3 354,972 + GFF2108 0.30 -0.8 354,973 - GFF2108 0.30 -0.5 355,000 - GFF2108 0.35 -1.7 355,011 + GFF2108 0.37 -0.7 355,011 + GFF2108 0.37 +0.1 355,011 + GFF2108 0.37 +1.0 355,011 + GFF2108 0.37 +0.8 355,012 - GFF2108 0.37 -0.4 355,012 - GFF2108 0.37 -1.1 355,046 + GFF2108 0.43 -0.0 355,348 + -0.1 355,348 + -0.8 355,348 + +0.2 355,348 + +0.9 355,348 + +0.2 355,348 + +0.3 355,349 - -0.1 355,349 - -0.3 355,349 - -0.7 355,634 - GFF2109 0.55 +0.0 355,634 - GFF2109 0.55 +0.7 355,774 + GFF2109 0.82 -0.7 355,832 + -1.0 355,832 + -0.4 355,832 + +2.2 355,833 - -0.2 355,875 + +1.0 355,876 - +0.5 355,876 - -0.7 355,876 - -1.0 355,900 - -0.5 356,085 + GFF2110 0.30 +0.2 356,085 + GFF2110 0.30 +0.5 356,085 + GFF2110 0.30 +0.1 356,095 - GFF2110 0.32 +0.3 356,152 + GFF2110 0.43 +1.1 356,288 - GFF2110 0.70 -1.0 356,320 - GFF2110 0.77 +0.9 356,320 - GFF2110 0.77 +0.2 356,320 - GFF2110 0.77 +0.4 356,504 + -1.2 356,504 + -1.1 356,504 + +0.1 356,504 + +2.8 356,504 + +0.0 356,505 - +1.2 356,505 - -0.8 356,505 - +1.3 356,505 - -0.4 356,517 + +0.4 356,592 + -1.0 356,638 + GFF2111 0.11 -0.4 356,695 + GFF2111 0.17 -1.0 356,708 + GFF2111 0.18 +0.9 357,103 + GFF2111 0.55 -1.1 357,103 + GFF2111 0.55 -0.4 357,103 + GFF2111 0.55 -0.4 357,196 + GFF2111 0.64 -1.0 357,320 + GFF2111 0.76 -1.2 357,320 + GFF2111 0.76 +1.0 357,321 - GFF2111 0.76 -1.0 357,321 - GFF2111 0.76 -0.4 357,321 - GFF2111 0.76 +0.3 357,392 + GFF2111 0.82 -0.7
Or see this region's nucleotide sequence