Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2040 and GFF2041 are separated by 75 nucleotides GFF2041 and GFF2042 overlap by 1 nucleotides GFF2042 and GFF2043 are separated by 242 nucleotides
GFF2040 - hypothetical protein, at 282,940 to 283,317
GFF2040
GFF2041 - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 283,393 to 284,202
GFF2041
GFF2042 - Succinyl-diaminopimelate desuccinylase, at 284,202 to 285,353
GFF2042
GFF2043 - hypothetical protein, at 285,596 to 288,187
GFF2043
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1 at 283.395 kb on - strand at 283.410 kb on - strand at 283.410 kb on - strand at 283.410 kb on - strand at 283.416 kb on - strand at 283.416 kb on - strand at 283.641 kb on - strand, within GFF2041 at 283.919 kb on + strand, within GFF2041 at 283.919 kb on + strand, within GFF2041 at 283.919 kb on + strand, within GFF2041 at 283.919 kb on + strand, within GFF2041 at 283.920 kb on - strand, within GFF2041 at 283.922 kb on + strand, within GFF2041 at 283.922 kb on + strand, within GFF2041 at 283.922 kb on + strand, within GFF2041 at 283.923 kb on - strand, within GFF2041 at 283.923 kb on - strand, within GFF2041 at 283.923 kb on - strand, within GFF2041 at 285.393 kb on - strand at 285.393 kb on - strand at 285.393 kb on - strand at 285.393 kb on - strand at 285.427 kb on - strand at 285.452 kb on + strand at 285.452 kb on + strand at 285.453 kb on - strand at 285.453 kb on - strand at 285.453 kb on - strand at 285.490 kb on + strand at 285.675 kb on + strand at 285.676 kb on - strand at 285.676 kb on - strand at 285.885 kb on + strand, within GFF2043 at 285.885 kb on + strand, within GFF2043 at 285.886 kb on - strand, within GFF2043 at 285.886 kb on - strand, within GFF2043 at 285.979 kb on - strand, within GFF2043 at 286.246 kb on - strand, within GFF2043 at 286.246 kb on - strand, within GFF2043 at 286.308 kb on + strand, within GFF2043 at 286.309 kb on - strand, within GFF2043 at 286.320 kb on + strand, within GFF2043 at 286.321 kb on - strand, within GFF2043 at 286.323 kb on + strand, within GFF2043 at 286.323 kb on + strand, within GFF2043
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 283,395 - +1.2 283,410 - +0.1 283,410 - -1.7 283,410 - +0.2 283,416 - +0.6 283,416 - -0.5 283,641 - GFF2041 0.31 +0.4 283,919 + GFF2041 0.65 +1.1 283,919 + GFF2041 0.65 +0.1 283,919 + GFF2041 0.65 -0.1 283,919 + GFF2041 0.65 -0.2 283,920 - GFF2041 0.65 +0.8 283,922 + GFF2041 0.65 -0.2 283,922 + GFF2041 0.65 +0.2 283,922 + GFF2041 0.65 -0.7 283,923 - GFF2041 0.65 +0.4 283,923 - GFF2041 0.65 -0.3 283,923 - GFF2041 0.65 -1.5 285,393 - -0.2 285,393 - -2.0 285,393 - -0.2 285,393 - +0.5 285,427 - +0.5 285,452 + -0.1 285,452 + +0.2 285,453 - -0.2 285,453 - +1.4 285,453 - +0.6 285,490 + -1.0 285,675 + -0.5 285,676 - +0.4 285,676 - +0.7 285,885 + GFF2043 0.11 -0.1 285,885 + GFF2043 0.11 -0.3 285,886 - GFF2043 0.11 -0.0 285,886 - GFF2043 0.11 -0.8 285,979 - GFF2043 0.15 +1.6 286,246 - GFF2043 0.25 +0.6 286,246 - GFF2043 0.25 -1.0 286,308 + GFF2043 0.27 +0.6 286,309 - GFF2043 0.28 -0.6 286,320 + GFF2043 0.28 +0.5 286,321 - GFF2043 0.28 -1.1 286,323 + GFF2043 0.28 -0.1 286,323 + GFF2043 0.28 +0.7
Or see this region's nucleotide sequence