Strain Fitness in Pseudomonas sp. DMC3 around GFF2001

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2000 and GFF2001 are separated by 125 nucleotidesGFF2001 and GFF2002 are separated by 367 nucleotides GFF2000 - hypothetical protein, at 234,198 to 234,920 GFF2000 GFF2001 - hypothetical protein, at 235,046 to 235,390 GFF2001 GFF2002 - hypothetical protein, at 235,758 to 236,396 GFF2002 Position (kb) 235 236Strain fitness (log2 ratio) -2 -1 0 1at 234.151 kb on + strandat 234.151 kb on + strandat 234.165 kb on + strandat 234.165 kb on + strandat 234.165 kb on + strandat 234.166 kb on - strandat 234.166 kb on - strandat 234.166 kb on - strandat 234.166 kb on - strandat 234.166 kb on - strandat 234.166 kb on - strandat 234.166 kb on - strandat 234.407 kb on + strand, within GFF2000at 234.469 kb on + strand, within GFF2000at 234.477 kb on + strand, within GFF2000at 234.477 kb on + strand, within GFF2000at 234.477 kb on + strand, within GFF2000at 234.477 kb on + strand, within GFF2000at 234.477 kb on + strand, within GFF2000at 234.477 kb on + strand, within GFF2000at 234.477 kb on + strand, within GFF2000at 234.478 kb on - strand, within GFF2000at 234.478 kb on - strand, within GFF2000at 234.478 kb on - strand, within GFF2000at 234.478 kb on - strand, within GFF2000at 234.478 kb on - strand, within GFF2000at 234.486 kb on + strand, within GFF2000at 234.486 kb on + strand, within GFF2000at 234.486 kb on + strand, within GFF2000at 234.487 kb on - strand, within GFF2000at 234.495 kb on + strand, within GFF2000at 234.495 kb on + strand, within GFF2000at 234.495 kb on + strand, within GFF2000at 234.495 kb on + strand, within GFF2000at 234.496 kb on - strand, within GFF2000at 234.496 kb on - strand, within GFF2000at 234.496 kb on - strand, within GFF2000at 234.496 kb on - strand, within GFF2000at 234.783 kb on + strand, within GFF2000at 234.783 kb on + strand, within GFF2000at 234.783 kb on + strand, within GFF2000at 234.783 kb on + strand, within GFF2000at 234.783 kb on + strand, within GFF2000at 234.783 kb on + strand, within GFF2000at 234.783 kb on + strand, within GFF2000at 234.783 kb on + strand, within GFF2000at 234.783 kb on + strand, within GFF2000at 234.783 kb on + strand, within GFF2000at 234.783 kb on + strand, within GFF2000at 234.783 kb on + strand, within GFF2000at 234.784 kb on - strand, within GFF2000at 234.784 kb on - strand, within GFF2000at 234.784 kb on - strand, within GFF2000at 234.784 kb on - strand, within GFF2000at 234.784 kb on - strand, within GFF2000at 234.821 kb on + strand, within GFF2000at 234.821 kb on + strand, within GFF2000at 234.834 kb on + strand, within GFF2000at 234.834 kb on + strand, within GFF2000at 234.835 kb on - strand, within GFF2000at 234.835 kb on - strand, within GFF2000at 234.924 kb on + strandat 235.013 kb on + strandat 235.044 kb on - strandat 235.144 kb on + strand, within GFF2001at 235.169 kb on + strand, within GFF2001at 235.358 kb on - strandat 235.457 kb on - strandat 235.529 kb on + strandat 235.632 kb on + strandat 235.659 kb on - strandat 235.684 kb on - strandat 235.700 kb on - strandat 235.700 kb on - strandat 235.726 kb on - strandat 235.726 kb on - strandat 235.726 kb on - strandat 235.726 kb on - strandat 235.726 kb on - strandat 235.726 kb on - strandat 235.726 kb on - strandat 235.727 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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234,151 + -1.0
234,151 + -0.5
234,165 + -1.0
234,165 + -0.7
234,165 + -1.5
234,166 - -0.3
234,166 - -0.2
234,166 - -0.3
234,166 - -0.8
234,166 - -0.7
234,166 - +0.6
234,166 - -0.3
234,407 + GFF2000 0.29 -1.8
234,469 + GFF2000 0.37 +1.2
234,477 + GFF2000 0.39 -2.3
234,477 + GFF2000 0.39 -1.1
234,477 + GFF2000 0.39 +0.3
234,477 + GFF2000 0.39 -0.1
234,477 + GFF2000 0.39 -0.4
234,477 + GFF2000 0.39 +1.2
234,477 + GFF2000 0.39 -0.6
234,478 - GFF2000 0.39 -0.4
234,478 - GFF2000 0.39 -2.0
234,478 - GFF2000 0.39 -1.0
234,478 - GFF2000 0.39 -0.7
234,478 - GFF2000 0.39 +0.6
234,486 + GFF2000 0.40 -0.1
234,486 + GFF2000 0.40 -1.0
234,486 + GFF2000 0.40 -0.2
234,487 - GFF2000 0.40 -0.0
234,495 + GFF2000 0.41 -0.1
234,495 + GFF2000 0.41 -1.1
234,495 + GFF2000 0.41 -0.4
234,495 + GFF2000 0.41 +0.6
234,496 - GFF2000 0.41 +0.3
234,496 - GFF2000 0.41 -0.0
234,496 - GFF2000 0.41 +0.6
234,496 - GFF2000 0.41 +1.4
234,783 + GFF2000 0.81 -0.1
234,783 + GFF2000 0.81 -1.0
234,783 + GFF2000 0.81 +0.0
234,783 + GFF2000 0.81 -0.7
234,783 + GFF2000 0.81 +0.5
234,783 + GFF2000 0.81 +0.9
234,783 + GFF2000 0.81 -1.6
234,783 + GFF2000 0.81 +1.0
234,783 + GFF2000 0.81 +0.0
234,783 + GFF2000 0.81 +0.0
234,783 + GFF2000 0.81 +0.0
234,783 + GFF2000 0.81 -0.0
234,784 - GFF2000 0.81 -0.1
234,784 - GFF2000 0.81 -1.3
234,784 - GFF2000 0.81 -0.7
234,784 - GFF2000 0.81 +0.5
234,784 - GFF2000 0.81 -0.6
234,821 + GFF2000 0.86 +0.8
234,821 + GFF2000 0.86 +0.1
234,834 + GFF2000 0.88 -1.7
234,834 + GFF2000 0.88 +0.6
234,835 - GFF2000 0.88 -1.0
234,835 - GFF2000 0.88 +1.3
234,924 + +0.5
235,013 + +0.2
235,044 - -1.4
235,144 + GFF2001 0.28 -1.3
235,169 + GFF2001 0.36 -0.6
235,358 - -1.2
235,457 - +0.6
235,529 + +0.4
235,632 + +0.1
235,659 - +0.4
235,684 - -0.1
235,700 - -0.4
235,700 - +0.3
235,726 - -0.3
235,726 - +0.7
235,726 - +0.7
235,726 - +0.7
235,726 - +1.6
235,726 - -0.3
235,726 - -1.2
235,727 + -0.8

Or see this region's nucleotide sequence