Strain Fitness in Pseudomonas sp. DMC3 around GFF1979

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1978 and GFF1979 are separated by 275 nucleotidesGFF1979 and GFF1980 are separated by 12 nucleotides GFF1978 - Inner membrane metabolite transport protein YhjE, at 209,427 to 210,743 GFF1978 GFF1979 - hypothetical protein, at 211,019 to 212,260 GFF1979 GFF1980 - Inner membrane protein YpjD, at 212,273 to 213,142 GFF1980 Position (kb) 211 212 213Strain fitness (log2 ratio) -3 -2 -1 0 1at 210.106 kb on + strand, within GFF1978at 210.106 kb on + strand, within GFF1978at 210.106 kb on + strand, within GFF1978at 210.107 kb on - strand, within GFF1978at 210.149 kb on + strand, within GFF1978at 210.150 kb on - strand, within GFF1978at 210.468 kb on - strand, within GFF1978at 210.631 kb on + strandat 210.631 kb on + strandat 210.640 kb on + strandat 210.641 kb on - strandat 210.641 kb on - strandat 210.641 kb on - strandat 210.724 kb on + strandat 210.724 kb on + strandat 210.784 kb on + strandat 210.784 kb on + strandat 210.785 kb on - strandat 210.838 kb on - strandat 210.932 kb on - strandat 210.932 kb on - strandat 210.933 kb on + strandat 210.933 kb on + strandat 210.934 kb on - strandat 210.978 kb on - strandat 211.054 kb on + strandat 211.054 kb on + strandat 211.054 kb on + strandat 211.054 kb on + strandat 211.054 kb on + strandat 211.054 kb on + strandat 211.054 kb on + strandat 211.054 kb on + strandat 211.054 kb on + strandat 211.054 kb on + strandat 211.054 kb on + strandat 211.054 kb on + strandat 211.054 kb on + strandat 211.054 kb on + strandat 211.054 kb on + strandat 211.055 kb on - strandat 211.055 kb on - strandat 211.055 kb on - strandat 211.055 kb on - strandat 211.055 kb on - strandat 211.055 kb on - strandat 211.055 kb on - strandat 211.264 kb on + strand, within GFF1979at 211.264 kb on + strand, within GFF1979at 211.467 kb on + strand, within GFF1979at 211.467 kb on + strand, within GFF1979at 211.468 kb on - strand, within GFF1979at 211.468 kb on - strand, within GFF1979at 211.477 kb on - strand, within GFF1979at 211.477 kb on - strand, within GFF1979at 211.956 kb on + strand, within GFF1979at 212.150 kb on - strandat 212.150 kb on - strandat 212.150 kb on - strandat 212.207 kb on + strandat 212.207 kb on + strandat 212.208 kb on - strandat 212.225 kb on + strandat 212.225 kb on + strandat 212.226 kb on - strandat 212.262 kb on + strandat 212.262 kb on + strandat 212.263 kb on - strandat 212.289 kb on + strandat 212.289 kb on + strandat 212.290 kb on - strandat 212.290 kb on - strandat 212.290 kb on - strandat 212.316 kb on + strandat 212.514 kb on - strand, within GFF1980at 212.687 kb on + strand, within GFF1980at 212.687 kb on + strand, within GFF1980at 212.687 kb on + strand, within GFF1980at 212.687 kb on + strand, within GFF1980at 212.688 kb on - strand, within GFF1980at 212.688 kb on - strand, within GFF1980at 212.909 kb on + strand, within GFF1980at 212.909 kb on + strand, within GFF1980at 212.909 kb on + strand, within GFF1980at 212.909 kb on + strand, within GFF1980at 212.909 kb on + strand, within GFF1980at 212.910 kb on - strand, within GFF1980at 212.910 kb on - strand, within GFF1980at 212.910 kb on - strand, within GFF1980at 212.910 kb on - strand, within GFF1980at 212.910 kb on - strand, within GFF1980at 212.910 kb on - strand, within GFF1980at 212.917 kb on + strand, within GFF1980at 212.918 kb on - strand, within GFF1980at 212.918 kb on - strand, within GFF1980at 213.033 kb on + strand, within GFF1980at 213.033 kb on + strand, within GFF1980at 213.033 kb on + strand, within GFF1980at 213.085 kb on + strandat 213.085 kb on + strandat 213.085 kb on + strandat 213.085 kb on + strandat 213.085 kb on + strandat 213.085 kb on + strandat 213.086 kb on - strandat 213.086 kb on - strandat 213.086 kb on - strandat 213.126 kb on + strandat 213.126 kb on + strandat 213.193 kb on + strandat 213.193 kb on + strandat 213.194 kb on - strandat 213.194 kb on - strandat 213.194 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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210,106 + GFF1978 0.52 -1.8
210,106 + GFF1978 0.52 +0.7
210,106 + GFF1978 0.52 -1.7
210,107 - GFF1978 0.52 -0.2
210,149 + GFF1978 0.55 +0.1
210,150 - GFF1978 0.55 -0.6
210,468 - GFF1978 0.79 -2.4
210,631 + -0.7
210,631 + +0.0
210,640 + +0.0
210,641 - -0.7
210,641 - +1.2
210,641 - -0.2
210,724 + -1.4
210,724 + -1.0
210,784 + -0.4
210,784 + +0.5
210,785 - -0.2
210,838 - +0.3
210,932 - -0.8
210,932 - +0.3
210,933 + -0.4
210,933 + +0.2
210,934 - -0.4
210,978 - -0.7
211,054 + -1.0
211,054 + -1.8
211,054 + -0.2
211,054 + +0.2
211,054 + +0.3
211,054 + +0.5
211,054 + -1.0
211,054 + +0.8
211,054 + -0.4
211,054 + -0.4
211,054 + +0.5
211,054 + -0.0
211,054 + +0.5
211,054 + +0.9
211,054 + -0.2
211,055 - +0.5
211,055 - -0.1
211,055 - -2.1
211,055 - +0.6
211,055 - -1.3
211,055 - -1.7
211,055 - -1.2
211,264 + GFF1979 0.20 -0.2
211,264 + GFF1979 0.20 -1.2
211,467 + GFF1979 0.36 -0.4
211,467 + GFF1979 0.36 -0.2
211,468 - GFF1979 0.36 +0.4
211,468 - GFF1979 0.36 +0.4
211,477 - GFF1979 0.37 -1.2
211,477 - GFF1979 0.37 -1.4
211,956 + GFF1979 0.75 -1.2
212,150 - -1.1
212,150 - -1.5
212,150 - -0.8
212,207 + -0.8
212,207 + -2.1
212,208 - +0.1
212,225 + -0.4
212,225 + +0.1
212,226 - +0.5
212,262 + -2.1
212,262 + +0.6
212,263 - -2.7
212,289 + -0.1
212,289 + -1.8
212,290 - -3.0
212,290 - -0.4
212,290 - -1.1
212,316 + +0.2
212,514 - GFF1980 0.28 +0.8
212,687 + GFF1980 0.48 -0.6
212,687 + GFF1980 0.48 -0.4
212,687 + GFF1980 0.48 +1.3
212,687 + GFF1980 0.48 -0.4
212,688 - GFF1980 0.48 +0.0
212,688 - GFF1980 0.48 -1.0
212,909 + GFF1980 0.73 +0.3
212,909 + GFF1980 0.73 -1.2
212,909 + GFF1980 0.73 +0.3
212,909 + GFF1980 0.73 +0.5
212,909 + GFF1980 0.73 +0.3
212,910 - GFF1980 0.73 -1.0
212,910 - GFF1980 0.73 +0.3
212,910 - GFF1980 0.73 -0.1
212,910 - GFF1980 0.73 -0.9
212,910 - GFF1980 0.73 -0.0
212,910 - GFF1980 0.73 -0.1
212,917 + GFF1980 0.74 -1.0
212,918 - GFF1980 0.74 -1.3
212,918 - GFF1980 0.74 +0.8
213,033 + GFF1980 0.87 -0.7
213,033 + GFF1980 0.87 +0.8
213,033 + GFF1980 0.87 -0.2
213,085 + +0.2
213,085 + -0.6
213,085 + -0.4
213,085 + -0.1
213,085 + -1.0
213,085 + +0.8
213,086 - +0.0
213,086 - +0.4
213,086 - -1.8
213,126 + +0.0
213,126 + +0.8
213,193 + +0.0
213,193 + +0.0
213,194 - -0.5
213,194 - -1.4
213,194 - +0.3

Or see this region's nucleotide sequence