Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1968 and GFF1969 overlap by 20 nucleotides GFF1969 and GFF1970 are separated by 40 nucleotides
GFF1968 - hypothetical protein, at 201,574 to 202,596
GFF1968
GFF1969 - N-acetylgalactosamine-6-phosphate deacetylase, at 202,577 to 203,683
GFF1969
GFF1970 - HTH-type transcriptional repressor NagR, at 203,724 to 204,455
GFF1970
Position (kb)
202
203
204 Strain fitness (log2 ratio)
-1
0
1 at 202.430 kb on + strand, within GFF1968 at 202.872 kb on + strand, within GFF1969 at 202.872 kb on + strand, within GFF1969 at 202.872 kb on + strand, within GFF1969 at 202.873 kb on - strand, within GFF1969 at 202.873 kb on - strand, within GFF1969 at 202.873 kb on - strand, within GFF1969 at 202.873 kb on - strand, within GFF1969 at 202.920 kb on + strand, within GFF1969 at 202.921 kb on - strand, within GFF1969 at 202.921 kb on - strand, within GFF1969 at 202.998 kb on + strand, within GFF1969 at 202.999 kb on - strand, within GFF1969 at 203.065 kb on + strand, within GFF1969 at 203.066 kb on - strand, within GFF1969 at 203.066 kb on - strand, within GFF1969 at 203.067 kb on + strand, within GFF1969 at 203.067 kb on + strand, within GFF1969 at 203.067 kb on + strand, within GFF1969 at 203.068 kb on - strand, within GFF1969 at 203.122 kb on - strand, within GFF1969 at 203.244 kb on + strand, within GFF1969 at 203.316 kb on + strand, within GFF1969 at 203.316 kb on + strand, within GFF1969 at 203.316 kb on + strand, within GFF1969 at 203.316 kb on + strand, within GFF1969 at 203.316 kb on + strand, within GFF1969 at 203.317 kb on + strand, within GFF1969 at 203.317 kb on - strand, within GFF1969 at 203.384 kb on + strand, within GFF1969 at 203.506 kb on + strand, within GFF1969 at 203.506 kb on + strand, within GFF1969 at 203.506 kb on + strand, within GFF1969 at 203.507 kb on - strand, within GFF1969 at 203.725 kb on + strand at 203.726 kb on - strand at 203.729 kb on + strand at 203.729 kb on + strand at 203.729 kb on + strand at 203.752 kb on + strand at 203.753 kb on - strand at 203.756 kb on - strand at 203.756 kb on - strand at 203.770 kb on + strand at 203.770 kb on + strand at 203.771 kb on - strand at 203.771 kb on - strand at 203.771 kb on - strand at 203.942 kb on - strand, within GFF1970 at 204.403 kb on + strand at 204.436 kb on - strand at 204.436 kb on - strand at 204.436 kb on - strand at 204.457 kb on + strand at 204.458 kb on - strand at 204.478 kb on - strand at 204.479 kb on + strand at 204.479 kb on + strand at 204.480 kb on - strand at 204.650 kb on + strand at 204.650 kb on + strand at 204.651 kb on - strand at 204.651 kb on - strand at 204.651 kb on - strand at 204.665 kb on + strand at 204.676 kb on + strand at 204.676 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 202,430 + GFF1968 0.84 -0.3 202,872 + GFF1969 0.27 +0.1 202,872 + GFF1969 0.27 -0.5 202,872 + GFF1969 0.27 -1.4 202,873 - GFF1969 0.27 -0.8 202,873 - GFF1969 0.27 +0.5 202,873 - GFF1969 0.27 +0.4 202,873 - GFF1969 0.27 +0.2 202,920 + GFF1969 0.31 +0.7 202,921 - GFF1969 0.31 -0.5 202,921 - GFF1969 0.31 +0.3 202,998 + GFF1969 0.38 -0.5 202,999 - GFF1969 0.38 -0.8 203,065 + GFF1969 0.44 +0.5 203,066 - GFF1969 0.44 +0.8 203,066 - GFF1969 0.44 -1.0 203,067 + GFF1969 0.44 +0.3 203,067 + GFF1969 0.44 +0.7 203,067 + GFF1969 0.44 -0.2 203,068 - GFF1969 0.44 -0.5 203,122 - GFF1969 0.49 -0.3 203,244 + GFF1969 0.60 +0.7 203,316 + GFF1969 0.67 -0.6 203,316 + GFF1969 0.67 -0.6 203,316 + GFF1969 0.67 -1.0 203,316 + GFF1969 0.67 +0.0 203,316 + GFF1969 0.67 -0.6 203,317 + GFF1969 0.67 +1.6 203,317 - GFF1969 0.67 +0.9 203,384 + GFF1969 0.73 -0.4 203,506 + GFF1969 0.84 -0.7 203,506 + GFF1969 0.84 +0.6 203,506 + GFF1969 0.84 +0.3 203,507 - GFF1969 0.84 +1.0 203,725 + +1.2 203,726 - -0.6 203,729 + -0.7 203,729 + -0.4 203,729 + -0.2 203,752 + +0.2 203,753 - -0.2 203,756 - +0.5 203,756 - -0.5 203,770 + -0.5 203,770 + -1.0 203,771 - -0.3 203,771 - +0.0 203,771 - +0.6 203,942 - GFF1970 0.30 -0.7 204,403 + +0.6 204,436 - +0.0 204,436 - -0.2 204,436 - +0.4 204,457 + -1.1 204,458 - +1.3 204,478 - -0.0 204,479 + +0.4 204,479 + +0.5 204,480 - -1.1 204,650 + -0.5 204,650 + +0.3 204,651 - -0.5 204,651 - -0.6 204,651 - -1.2 204,665 + -1.0 204,676 + +0.4 204,676 + +0.4
Or see this region's nucleotide sequence