Strain Fitness in Pseudomonas sp. DMC3 around GFF1969

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1968 and GFF1969 overlap by 20 nucleotidesGFF1969 and GFF1970 are separated by 40 nucleotides GFF1968 - hypothetical protein, at 201,574 to 202,596 GFF1968 GFF1969 - N-acetylgalactosamine-6-phosphate deacetylase, at 202,577 to 203,683 GFF1969 GFF1970 - HTH-type transcriptional repressor NagR, at 203,724 to 204,455 GFF1970 Position (kb) 202 203 204Strain fitness (log2 ratio) -1 0 1at 202.430 kb on + strand, within GFF1968at 202.872 kb on + strand, within GFF1969at 202.872 kb on + strand, within GFF1969at 202.872 kb on + strand, within GFF1969at 202.873 kb on - strand, within GFF1969at 202.873 kb on - strand, within GFF1969at 202.873 kb on - strand, within GFF1969at 202.873 kb on - strand, within GFF1969at 202.920 kb on + strand, within GFF1969at 202.921 kb on - strand, within GFF1969at 202.921 kb on - strand, within GFF1969at 202.998 kb on + strand, within GFF1969at 202.999 kb on - strand, within GFF1969at 203.065 kb on + strand, within GFF1969at 203.066 kb on - strand, within GFF1969at 203.066 kb on - strand, within GFF1969at 203.067 kb on + strand, within GFF1969at 203.067 kb on + strand, within GFF1969at 203.067 kb on + strand, within GFF1969at 203.068 kb on - strand, within GFF1969at 203.122 kb on - strand, within GFF1969at 203.244 kb on + strand, within GFF1969at 203.316 kb on + strand, within GFF1969at 203.316 kb on + strand, within GFF1969at 203.316 kb on + strand, within GFF1969at 203.316 kb on + strand, within GFF1969at 203.316 kb on + strand, within GFF1969at 203.317 kb on + strand, within GFF1969at 203.317 kb on - strand, within GFF1969at 203.384 kb on + strand, within GFF1969at 203.506 kb on + strand, within GFF1969at 203.506 kb on + strand, within GFF1969at 203.506 kb on + strand, within GFF1969at 203.507 kb on - strand, within GFF1969at 203.725 kb on + strandat 203.726 kb on - strandat 203.729 kb on + strandat 203.729 kb on + strandat 203.729 kb on + strandat 203.752 kb on + strandat 203.753 kb on - strandat 203.756 kb on - strandat 203.756 kb on - strandat 203.770 kb on + strandat 203.770 kb on + strandat 203.771 kb on - strandat 203.771 kb on - strandat 203.771 kb on - strandat 203.942 kb on - strand, within GFF1970at 204.403 kb on + strandat 204.436 kb on - strandat 204.436 kb on - strandat 204.436 kb on - strandat 204.457 kb on + strandat 204.458 kb on - strandat 204.478 kb on - strandat 204.479 kb on + strandat 204.479 kb on + strandat 204.480 kb on - strandat 204.650 kb on + strandat 204.650 kb on + strandat 204.651 kb on - strandat 204.651 kb on - strandat 204.651 kb on - strandat 204.665 kb on + strandat 204.676 kb on + strandat 204.676 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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202,430 + GFF1968 0.84 -0.3
202,872 + GFF1969 0.27 +0.1
202,872 + GFF1969 0.27 -0.5
202,872 + GFF1969 0.27 -1.4
202,873 - GFF1969 0.27 -0.8
202,873 - GFF1969 0.27 +0.5
202,873 - GFF1969 0.27 +0.4
202,873 - GFF1969 0.27 +0.2
202,920 + GFF1969 0.31 +0.7
202,921 - GFF1969 0.31 -0.5
202,921 - GFF1969 0.31 +0.3
202,998 + GFF1969 0.38 -0.5
202,999 - GFF1969 0.38 -0.8
203,065 + GFF1969 0.44 +0.5
203,066 - GFF1969 0.44 +0.8
203,066 - GFF1969 0.44 -1.0
203,067 + GFF1969 0.44 +0.3
203,067 + GFF1969 0.44 +0.7
203,067 + GFF1969 0.44 -0.2
203,068 - GFF1969 0.44 -0.5
203,122 - GFF1969 0.49 -0.3
203,244 + GFF1969 0.60 +0.7
203,316 + GFF1969 0.67 -0.6
203,316 + GFF1969 0.67 -0.6
203,316 + GFF1969 0.67 -1.0
203,316 + GFF1969 0.67 +0.0
203,316 + GFF1969 0.67 -0.6
203,317 + GFF1969 0.67 +1.6
203,317 - GFF1969 0.67 +0.9
203,384 + GFF1969 0.73 -0.4
203,506 + GFF1969 0.84 -0.7
203,506 + GFF1969 0.84 +0.6
203,506 + GFF1969 0.84 +0.3
203,507 - GFF1969 0.84 +1.0
203,725 + +1.2
203,726 - -0.6
203,729 + -0.7
203,729 + -0.4
203,729 + -0.2
203,752 + +0.2
203,753 - -0.2
203,756 - +0.5
203,756 - -0.5
203,770 + -0.5
203,770 + -1.0
203,771 - -0.3
203,771 - +0.0
203,771 - +0.6
203,942 - GFF1970 0.30 -0.7
204,403 + +0.6
204,436 - +0.0
204,436 - -0.2
204,436 - +0.4
204,457 + -1.1
204,458 - +1.3
204,478 - -0.0
204,479 + +0.4
204,479 + +0.5
204,480 - -1.1
204,650 + -0.5
204,650 + +0.3
204,651 - -0.5
204,651 - -0.6
204,651 - -1.2
204,665 + -1.0
204,676 + +0.4
204,676 + +0.4

Or see this region's nucleotide sequence