Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1928 and GFF1929 are separated by 123 nucleotides GFF1929 and GFF1930 are separated by 84 nucleotides
GFF1928 - Lysine/arginine/ornithine-binding periplasmic protein, at 150,433 to 151,209
GFF1928
GFF1929 - Transcriptional regulator DauR, at 151,333 to 151,959
GFF1929
GFF1930 - FAD-dependent catabolic D-arginine dehydrogenase DauA, at 152,044 to 153,171
GFF1930
Position (kb) 151
152 Strain fitness (log2 ratio) -2
-1
0
1 at 150.349 kb on + strand at 150.350 kb on - strand at 150.368 kb on + strand at 150.368 kb on + strand at 150.369 kb on - strand at 150.369 kb on - strand at 150.385 kb on + strand at 150.385 kb on + strand at 150.386 kb on - strand at 150.386 kb on - strand at 150.483 kb on + strand at 150.536 kb on - strand, within GFF1928 at 150.677 kb on + strand, within GFF1928 at 150.754 kb on + strand, within GFF1928 at 150.754 kb on + strand, within GFF1928 at 150.755 kb on - strand, within GFF1928 at 150.755 kb on - strand, within GFF1928 at 150.755 kb on - strand, within GFF1928 at 150.755 kb on - strand, within GFF1928 at 150.755 kb on - strand, within GFF1928 at 150.755 kb on - strand, within GFF1928 at 150.757 kb on + strand, within GFF1928 at 150.757 kb on + strand, within GFF1928 at 150.758 kb on - strand, within GFF1928 at 150.796 kb on - strand, within GFF1928 at 150.934 kb on + strand, within GFF1928 at 150.934 kb on + strand, within GFF1928 at 150.935 kb on - strand, within GFF1928 at 150.935 kb on - strand, within GFF1928 at 150.935 kb on - strand, within GFF1928 at 150.935 kb on - strand, within GFF1928 at 150.935 kb on - strand, within GFF1928 at 150.935 kb on - strand, within GFF1928 at 151.061 kb on - strand, within GFF1928 at 151.180 kb on + strand at 151.181 kb on - strand at 151.181 kb on - strand at 151.199 kb on - strand at 151.281 kb on + strand at 151.282 kb on - strand at 151.361 kb on + strand at 151.362 kb on - strand at 151.362 kb on - strand at 151.362 kb on - strand at 151.400 kb on + strand, within GFF1929 at 151.401 kb on - strand, within GFF1929 at 151.638 kb on + strand, within GFF1929 at 151.639 kb on - strand, within GFF1929 at 151.639 kb on - strand, within GFF1929 at 151.740 kb on - strand, within GFF1929 at 151.835 kb on + strand, within GFF1929 at 151.836 kb on - strand, within GFF1929 at 151.836 kb on - strand, within GFF1929 at 151.836 kb on - strand, within GFF1929 at 151.927 kb on - strand at 152.092 kb on - strand at 152.092 kb on - strand at 152.318 kb on + strand, within GFF1930 at 152.318 kb on + strand, within GFF1930 at 152.423 kb on + strand, within GFF1930 at 152.423 kb on + strand, within GFF1930 at 152.424 kb on - strand, within GFF1930 at 152.424 kb on - strand, within GFF1930 at 152.493 kb on + strand, within GFF1930 at 152.493 kb on + strand, within GFF1930 at 152.493 kb on + strand, within GFF1930 at 152.493 kb on + strand, within GFF1930 at 152.711 kb on + strand, within GFF1930 at 152.712 kb on - strand, within GFF1930 at 152.712 kb on - strand, within GFF1930 at 152.760 kb on - strand, within GFF1930 at 152.760 kb on - strand, within GFF1930 at 152.760 kb on - strand, within GFF1930 at 152.864 kb on + strand, within GFF1930 at 152.865 kb on - strand, within GFF1930 at 152.865 kb on - strand, within GFF1930 at 152.865 kb on - strand, within GFF1930 at 152.865 kb on - strand, within GFF1930
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 150,349 + -0.4 150,350 - +0.3 150,368 + +0.1 150,368 + -0.0 150,369 - -0.6 150,369 - -1.2 150,385 + -0.7 150,385 + +0.2 150,386 - -0.9 150,386 - +0.5 150,483 + +0.3 150,536 - GFF1928 0.13 -0.6 150,677 + GFF1928 0.31 -0.2 150,754 + GFF1928 0.41 +0.1 150,754 + GFF1928 0.41 -1.8 150,755 - GFF1928 0.41 -0.4 150,755 - GFF1928 0.41 +0.8 150,755 - GFF1928 0.41 -0.7 150,755 - GFF1928 0.41 +1.4 150,755 - GFF1928 0.41 -0.1 150,755 - GFF1928 0.41 +0.7 150,757 + GFF1928 0.42 +0.3 150,757 + GFF1928 0.42 -0.5 150,758 - GFF1928 0.42 -0.9 150,796 - GFF1928 0.47 -1.1 150,934 + GFF1928 0.64 -1.5 150,934 + GFF1928 0.64 -0.2 150,935 - GFF1928 0.65 -0.5 150,935 - GFF1928 0.65 -1.0 150,935 - GFF1928 0.65 -0.0 150,935 - GFF1928 0.65 +0.5 150,935 - GFF1928 0.65 +0.8 150,935 - GFF1928 0.65 -2.4 151,061 - GFF1928 0.81 -0.7 151,180 + -0.5 151,181 - -1.2 151,181 - +0.9 151,199 - -1.2 151,281 + -1.4 151,282 - -0.3 151,361 + +0.1 151,362 - -0.1 151,362 - +0.8 151,362 - +0.7 151,400 + GFF1929 0.11 +0.1 151,401 - GFF1929 0.11 -0.7 151,638 + GFF1929 0.49 -0.4 151,639 - GFF1929 0.49 +0.0 151,639 - GFF1929 0.49 +0.2 151,740 - GFF1929 0.65 -0.9 151,835 + GFF1929 0.80 +0.2 151,836 - GFF1929 0.80 -1.7 151,836 - GFF1929 0.80 -0.7 151,836 - GFF1929 0.80 -1.3 151,927 - -0.2 152,092 - -0.7 152,092 - +0.3 152,318 + GFF1930 0.24 +0.4 152,318 + GFF1930 0.24 +0.2 152,423 + GFF1930 0.34 +0.3 152,423 + GFF1930 0.34 -2.3 152,424 - GFF1930 0.34 +0.3 152,424 - GFF1930 0.34 +0.3 152,493 + GFF1930 0.40 -0.4 152,493 + GFF1930 0.40 -0.0 152,493 + GFF1930 0.40 -0.2 152,493 + GFF1930 0.40 +0.1 152,711 + GFF1930 0.59 +0.4 152,712 - GFF1930 0.59 -0.1 152,712 - GFF1930 0.59 -1.5 152,760 - GFF1930 0.63 -0.4 152,760 - GFF1930 0.63 -1.5 152,760 - GFF1930 0.63 -0.1 152,864 + GFF1930 0.73 -1.0 152,865 - GFF1930 0.73 +0.6 152,865 - GFF1930 0.73 +0.3 152,865 - GFF1930 0.73 +0.1 152,865 - GFF1930 0.73 -0.6
Or see this region's nucleotide sequence