Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1924 and GFF1925 are separated by 240 nucleotides GFF1925 and GFF1926 overlap by 4 nucleotides GFF1926 and GFF1927 are separated by 2 nucleotides GFF1927 and GFF1928 are separated by 263 nucleotides
GFF1924 - hypothetical protein, at 147,367 to 148,761
GFF1924
GFF1925 - Cyclic pyranopterin monophosphate synthase, at 149,002 to 149,475
GFF1925
GFF1926 - Molybdopterin synthase sulfur carrier subunit, at 149,472 to 149,714
GFF1926
GFF1927 - Molybdopterin synthase catalytic subunit, at 149,717 to 150,169
GFF1927
GFF1928 - Lysine/arginine/ornithine-binding periplasmic protein, at 150,433 to 151,209
GFF1928
Position (kb) 149
150 Strain fitness (log2 ratio) -2
-1
0
1 at 148.144 kb on + strand, within GFF1924 at 148.144 kb on + strand, within GFF1924 at 148.144 kb on + strand, within GFF1924 at 148.145 kb on - strand, within GFF1924 at 148.145 kb on - strand, within GFF1924 at 148.162 kb on + strand, within GFF1924 at 148.162 kb on + strand, within GFF1924 at 148.162 kb on + strand, within GFF1924 at 148.162 kb on + strand, within GFF1924 at 148.163 kb on - strand, within GFF1924 at 148.163 kb on - strand, within GFF1924 at 148.163 kb on - strand, within GFF1924 at 148.163 kb on - strand, within GFF1924 at 148.438 kb on + strand, within GFF1924 at 148.438 kb on + strand, within GFF1924 at 148.438 kb on + strand, within GFF1924 at 148.438 kb on + strand, within GFF1924 at 148.438 kb on + strand, within GFF1924 at 148.439 kb on - strand, within GFF1924 at 148.439 kb on - strand, within GFF1924 at 148.480 kb on + strand, within GFF1924 at 148.480 kb on + strand, within GFF1924 at 148.480 kb on + strand, within GFF1924 at 148.480 kb on + strand, within GFF1924 at 148.480 kb on + strand, within GFF1924 at 148.481 kb on - strand, within GFF1924 at 148.630 kb on + strand at 148.630 kb on + strand at 148.661 kb on - strand at 148.661 kb on - strand at 148.821 kb on + strand at 148.822 kb on - strand at 148.859 kb on + strand at 148.860 kb on - strand at 148.860 kb on - strand at 148.860 kb on - strand at 148.873 kb on + strand at 148.873 kb on + strand at 148.873 kb on + strand at 148.873 kb on + strand at 148.873 kb on + strand at 148.873 kb on + strand at 148.873 kb on + strand at 148.873 kb on + strand at 148.873 kb on + strand at 148.873 kb on + strand at 148.874 kb on - strand at 148.874 kb on - strand at 148.874 kb on - strand at 148.874 kb on - strand at 148.874 kb on - strand at 148.874 kb on - strand at 148.874 kb on - strand at 148.874 kb on - strand at 148.874 kb on - strand at 148.874 kb on - strand at 148.938 kb on - strand at 148.970 kb on + strand at 148.971 kb on - strand at 148.995 kb on + strand at 148.996 kb on - strand at 149.371 kb on + strand, within GFF1925 at 149.371 kb on + strand, within GFF1925 at 150.059 kb on + strand, within GFF1927 at 150.060 kb on - strand, within GFF1927 at 150.060 kb on - strand, within GFF1927 at 150.167 kb on + strand at 150.168 kb on - strand at 150.190 kb on - strand at 150.190 kb on - strand at 150.349 kb on + strand at 150.350 kb on - strand at 150.368 kb on + strand at 150.368 kb on + strand at 150.369 kb on - strand at 150.369 kb on - strand at 150.385 kb on + strand at 150.385 kb on + strand at 150.386 kb on - strand at 150.386 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 148,144 + GFF1924 0.56 -1.1 148,144 + GFF1924 0.56 +0.0 148,144 + GFF1924 0.56 -0.5 148,145 - GFF1924 0.56 -0.2 148,145 - GFF1924 0.56 +0.3 148,162 + GFF1924 0.57 -2.3 148,162 + GFF1924 0.57 -0.1 148,162 + GFF1924 0.57 -0.7 148,162 + GFF1924 0.57 +0.6 148,163 - GFF1924 0.57 -0.0 148,163 - GFF1924 0.57 -0.6 148,163 - GFF1924 0.57 -0.5 148,163 - GFF1924 0.57 -0.7 148,438 + GFF1924 0.77 +0.3 148,438 + GFF1924 0.77 -0.8 148,438 + GFF1924 0.77 +0.0 148,438 + GFF1924 0.77 -0.5 148,438 + GFF1924 0.77 -0.6 148,439 - GFF1924 0.77 -0.0 148,439 - GFF1924 0.77 -0.3 148,480 + GFF1924 0.80 -0.7 148,480 + GFF1924 0.80 -0.0 148,480 + GFF1924 0.80 +0.2 148,480 + GFF1924 0.80 +1.2 148,480 + GFF1924 0.80 -0.4 148,481 - GFF1924 0.80 -0.5 148,630 + -0.9 148,630 + -1.7 148,661 - -1.5 148,661 - -0.8 148,821 + -0.3 148,822 - +0.0 148,859 + -1.8 148,860 - -1.2 148,860 - +1.6 148,860 - -0.0 148,873 + +0.4 148,873 + -0.1 148,873 + -0.3 148,873 + +0.3 148,873 + +0.9 148,873 + -0.5 148,873 + +0.0 148,873 + -0.7 148,873 + -1.0 148,873 + -0.9 148,874 - -0.4 148,874 - +0.8 148,874 - +0.3 148,874 - -0.2 148,874 - -0.6 148,874 - -0.0 148,874 - -0.3 148,874 - -0.8 148,874 - -0.6 148,874 - +0.0 148,938 - -0.8 148,970 + +0.3 148,971 - -0.0 148,995 + -0.6 148,996 - +0.4 149,371 + GFF1925 0.78 +0.1 149,371 + GFF1925 0.78 -1.7 150,059 + GFF1927 0.75 -1.1 150,060 - GFF1927 0.76 -0.2 150,060 - GFF1927 0.76 +0.4 150,167 + -0.4 150,168 - +0.2 150,190 - -1.1 150,190 - +0.2 150,349 + -0.4 150,350 - +0.3 150,368 + +0.1 150,368 + -0.0 150,369 - -0.6 150,369 - -1.2 150,385 + -0.7 150,385 + +0.2 150,386 - -0.9 150,386 - +0.5
Or see this region's nucleotide sequence