Strain Fitness in Pseudomonas sp. DMC3 around GFF1835

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1834 and GFF1835 overlap by 1 nucleotidesGFF1835 and GFF1836 overlap by 1 nucleotidesGFF1836 and GFF1837 are separated by 11 nucleotides GFF1834 - Intermembrane phospholipid transport system ATP-binding protein MlaF, at 44,102 to 44,911 GFF1834 GFF1835 - Intermembrane phospholipid transport system permease protein MlaE, at 44,911 to 45,708 GFF1835 GFF1836 - Intermembrane phospholipid transport system binding protein MlaD, at 45,708 to 46,175 GFF1836 GFF1837 - Intermembrane phospholipid transport system binding protein MlaC, at 46,187 to 46,840 GFF1837 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1at 44.009 kb on + strandat 44.009 kb on + strandat 44.010 kb on - strandat 44.011 kb on + strandat 44.011 kb on + strandat 44.011 kb on + strandat 44.011 kb on + strandat 44.011 kb on + strandat 44.012 kb on - strandat 44.012 kb on - strandat 44.012 kb on - strandat 44.012 kb on - strandat 44.012 kb on - strandat 44.012 kb on - strandat 44.012 kb on - strandat 44.012 kb on - strandat 44.012 kb on - strandat 44.099 kb on + strandat 44.100 kb on - strandat 44.100 kb on - strandat 44.120 kb on + strandat 44.120 kb on + strandat 44.176 kb on + strandat 44.488 kb on - strand, within GFF1834at 44.603 kb on + strand, within GFF1834at 44.604 kb on - strand, within GFF1834at 44.604 kb on - strand, within GFF1834at 44.604 kb on - strand, within GFF1834at 44.604 kb on - strand, within GFF1834at 44.604 kb on - strand, within GFF1834at 44.742 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.748 kb on - strand, within GFF1834at 44.752 kb on - strand, within GFF1834at 44.752 kb on - strand, within GFF1834at 44.752 kb on - strand, within GFF1834at 45.164 kb on - strand, within GFF1835at 45.164 kb on - strand, within GFF1835at 45.164 kb on - strand, within GFF1835at 45.347 kb on - strand, within GFF1835at 45.347 kb on - strand, within GFF1835at 45.347 kb on - strand, within GFF1835at 45.347 kb on - strand, within GFF1835at 45.347 kb on - strand, within GFF1835at 45.347 kb on - strand, within GFF1835at 45.347 kb on - strand, within GFF1835at 45.476 kb on - strand, within GFF1835at 45.586 kb on + strand, within GFF1835at 45.587 kb on - strand, within GFF1835at 45.587 kb on - strand, within GFF1835at 45.587 kb on - strand, within GFF1835at 45.676 kb on - strandat 45.825 kb on + strand, within GFF1836at 45.825 kb on + strand, within GFF1836at 45.825 kb on + strand, within GFF1836at 45.826 kb on - strand, within GFF1836at 45.826 kb on - strand, within GFF1836at 45.826 kb on - strand, within GFF1836at 45.826 kb on - strand, within GFF1836at 45.834 kb on + strand, within GFF1836at 45.834 kb on + strand, within GFF1836at 45.834 kb on + strand, within GFF1836at 45.834 kb on + strand, within GFF1836at 45.835 kb on - strand, within GFF1836at 45.835 kb on - strand, within GFF1836at 45.835 kb on - strand, within GFF1836at 45.835 kb on - strand, within GFF1836at 45.840 kb on + strand, within GFF1836at 45.840 kb on + strand, within GFF1836at 45.840 kb on + strand, within GFF1836at 45.841 kb on - strand, within GFF1836at 45.841 kb on - strand, within GFF1836at 45.851 kb on + strand, within GFF1836at 45.852 kb on - strand, within GFF1836at 46.008 kb on - strand, within GFF1836at 46.038 kb on + strand, within GFF1836at 46.039 kb on - strand, within GFF1836at 46.039 kb on - strand, within GFF1836at 46.046 kb on + strand, within GFF1836at 46.195 kb on + strandat 46.196 kb on - strandat 46.196 kb on - strandat 46.334 kb on + strand, within GFF1837at 46.334 kb on + strand, within GFF1837at 46.334 kb on + strand, within GFF1837at 46.334 kb on + strand, within GFF1837at 46.335 kb on - strand, within GFF1837at 46.335 kb on - strand, within GFF1837at 46.335 kb on - strand, within GFF1837at 46.335 kb on - strand, within GFF1837at 46.335 kb on - strand, within GFF1837at 46.335 kb on - strand, within GFF1837at 46.358 kb on + strand, within GFF1837at 46.359 kb on - strand, within GFF1837at 46.433 kb on + strand, within GFF1837at 46.434 kb on - strand, within GFF1837at 46.434 kb on - strand, within GFF1837at 46.506 kb on - strand, within GFF1837at 46.526 kb on + strand, within GFF1837at 46.527 kb on - strand, within GFF1837at 46.622 kb on + strand, within GFF1837at 46.623 kb on - strand, within GFF1837at 46.635 kb on - strand, within GFF1837at 46.635 kb on - strand, within GFF1837

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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44,009 + -0.4
44,009 + -0.2
44,010 - -1.6
44,011 + -0.1
44,011 + -0.6
44,011 + -0.5
44,011 + +0.5
44,011 + -0.8
44,012 - +0.9
44,012 - -0.6
44,012 - -0.8
44,012 - -0.3
44,012 - -2.4
44,012 - -0.0
44,012 - +0.1
44,012 - -0.1
44,012 - -0.0
44,099 + -0.2
44,100 - -0.0
44,100 - +1.6
44,120 + +0.8
44,120 + +0.0
44,176 + -1.4
44,488 - GFF1834 0.48 +1.0
44,603 + GFF1834 0.62 +1.2
44,604 - GFF1834 0.62 +0.5
44,604 - GFF1834 0.62 -0.6
44,604 - GFF1834 0.62 -0.4
44,604 - GFF1834 0.62 -0.0
44,604 - GFF1834 0.62 +1.2
44,742 - GFF1834 0.79 +0.9
44,748 - GFF1834 0.80 +0.7
44,748 - GFF1834 0.80 -0.2
44,748 - GFF1834 0.80 +0.2
44,748 - GFF1834 0.80 -0.7
44,748 - GFF1834 0.80 -0.1
44,748 - GFF1834 0.80 +0.5
44,748 - GFF1834 0.80 -0.7
44,748 - GFF1834 0.80 -0.2
44,748 - GFF1834 0.80 -0.3
44,748 - GFF1834 0.80 +0.3
44,748 - GFF1834 0.80 +0.5
44,748 - GFF1834 0.80 -0.5
44,748 - GFF1834 0.80 +1.0
44,748 - GFF1834 0.80 -0.4
44,748 - GFF1834 0.80 +0.5
44,748 - GFF1834 0.80 -0.2
44,748 - GFF1834 0.80 -0.2
44,748 - GFF1834 0.80 -0.3
44,748 - GFF1834 0.80 -0.3
44,748 - GFF1834 0.80 -1.6
44,748 - GFF1834 0.80 -0.5
44,748 - GFF1834 0.80 +0.4
44,748 - GFF1834 0.80 -0.6
44,752 - GFF1834 0.80 -0.2
44,752 - GFF1834 0.80 -0.0
44,752 - GFF1834 0.80 +0.5
45,164 - GFF1835 0.32 -0.4
45,164 - GFF1835 0.32 -1.4
45,164 - GFF1835 0.32 -1.2
45,347 - GFF1835 0.55 -0.8
45,347 - GFF1835 0.55 +1.3
45,347 - GFF1835 0.55 -0.2
45,347 - GFF1835 0.55 -1.5
45,347 - GFF1835 0.55 -0.1
45,347 - GFF1835 0.55 -1.0
45,347 - GFF1835 0.55 -0.1
45,476 - GFF1835 0.71 +1.6
45,586 + GFF1835 0.85 -0.4
45,587 - GFF1835 0.85 +0.2
45,587 - GFF1835 0.85 -1.8
45,587 - GFF1835 0.85 -0.5
45,676 - +0.6
45,825 + GFF1836 0.25 -0.1
45,825 + GFF1836 0.25 -1.2
45,825 + GFF1836 0.25 -1.4
45,826 - GFF1836 0.25 -0.7
45,826 - GFF1836 0.25 +0.6
45,826 - GFF1836 0.25 +0.5
45,826 - GFF1836 0.25 -0.4
45,834 + GFF1836 0.27 -0.0
45,834 + GFF1836 0.27 +0.2
45,834 + GFF1836 0.27 -1.2
45,834 + GFF1836 0.27 -0.8
45,835 - GFF1836 0.27 +0.0
45,835 - GFF1836 0.27 -0.4
45,835 - GFF1836 0.27 -0.2
45,835 - GFF1836 0.27 +0.2
45,840 + GFF1836 0.28 +0.4
45,840 + GFF1836 0.28 -0.3
45,840 + GFF1836 0.28 -0.6
45,841 - GFF1836 0.28 +0.0
45,841 - GFF1836 0.28 +1.3
45,851 + GFF1836 0.31 +0.4
45,852 - GFF1836 0.31 +1.4
46,008 - GFF1836 0.64 -1.2
46,038 + GFF1836 0.71 +0.6
46,039 - GFF1836 0.71 +1.6
46,039 - GFF1836 0.71 +1.2
46,046 + GFF1836 0.72 -1.0
46,195 + -0.3
46,196 - +0.2
46,196 - +0.9
46,334 + GFF1837 0.22 +1.4
46,334 + GFF1837 0.22 +0.8
46,334 + GFF1837 0.22 -2.0
46,334 + GFF1837 0.22 +0.8
46,335 - GFF1837 0.23 -0.1
46,335 - GFF1837 0.23 +0.6
46,335 - GFF1837 0.23 +0.0
46,335 - GFF1837 0.23 -0.8
46,335 - GFF1837 0.23 +1.3
46,335 - GFF1837 0.23 -0.1
46,358 + GFF1837 0.26 -0.6
46,359 - GFF1837 0.26 +0.7
46,433 + GFF1837 0.38 -0.4
46,434 - GFF1837 0.38 +1.6
46,434 - GFF1837 0.38 +1.2
46,506 - GFF1837 0.49 +0.0
46,526 + GFF1837 0.52 -1.5
46,527 - GFF1837 0.52 -0.3
46,622 + GFF1837 0.67 -0.4
46,623 - GFF1837 0.67 +0.6
46,635 - GFF1837 0.69 +0.2
46,635 - GFF1837 0.69 +0.6

Or see this region's nucleotide sequence