Strain Fitness in Pseudomonas sp. DMC3 around GFF1831

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1829 and GFF1830 overlap by 1 nucleotidesGFF1830 and GFF1831 overlap by 14 nucleotidesGFF1831 and GFF1832 are separated by 8 nucleotidesGFF1832 and GFF1833 overlap by 1 nucleotides GFF1829 - Lipopolysaccharide export system ATP-binding protein LptB, at 40,493 to 41,218 GFF1829 GFF1830 - Lipopolysaccharide export system protein LptA, at 41,218 to 41,763 GFF1830 GFF1831 - Lipopolysaccharide export system protein LptC, at 41,750 to 42,322 GFF1831 GFF1832 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC, at 42,331 to 42,855 GFF1832 GFF1833 - Arabinose 5-phosphate isomerase KdsD, at 42,855 to 43,829 GFF1833 Position (kb) 41 42 43Strain fitness (log2 ratio) -2 -1 0 1at 41.775 kb on - strandat 41.775 kb on - strandat 41.838 kb on - strand, within GFF1831at 41.861 kb on - strand, within GFF1831at 42.052 kb on - strand, within GFF1831at 42.052 kb on - strand, within GFF1831at 42.052 kb on - strand, within GFF1831at 42.052 kb on - strand, within GFF1831

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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41,775 - +0.4
41,775 - +0.3
41,838 - GFF1831 0.15 +0.5
41,861 - GFF1831 0.19 -2.1
42,052 - GFF1831 0.53 -1.0
42,052 - GFF1831 0.53 -0.2
42,052 - GFF1831 0.53 -0.4
42,052 - GFF1831 0.53 -0.7

Or see this region's nucleotide sequence