Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1811 and GFF1812 are separated by 37 nucleotides GFF1812 and GFF1813 are separated by 58 nucleotides GFF1813 and GFF1814 are separated by 75 nucleotides
GFF1811 - Rod shape-determining protein MreD, at 21,853 to 22,344
GFF1811
GFF1812 - dTTP/UTP pyrophosphatase, at 22,382 to 22,978
GFF1812
GFF1813 - Ribonuclease G, at 23,037 to 24,494
GFF1813
GFF1814 - hypothetical protein, at 24,570 to 28,373
GFF1814
Position (kb) 23
24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 22.107 kb on + strand, within GFF1811 at 22.108 kb on - strand, within GFF1811 at 22.339 kb on + strand at 22.339 kb on + strand at 22.339 kb on + strand at 22.340 kb on - strand at 22.395 kb on - strand at 22.395 kb on - strand at 22.511 kb on + strand, within GFF1812 at 22.512 kb on - strand, within GFF1812 at 22.609 kb on - strand, within GFF1812 at 22.623 kb on + strand, within GFF1812 at 22.623 kb on + strand, within GFF1812 at 22.624 kb on - strand, within GFF1812 at 22.886 kb on + strand, within GFF1812 at 22.887 kb on - strand, within GFF1812 at 22.947 kb on + strand at 22.947 kb on + strand at 23.160 kb on + strand at 23.160 kb on + strand at 23.160 kb on + strand at 23.160 kb on + strand at 23.160 kb on + strand at 23.161 kb on - strand at 23.161 kb on - strand at 23.161 kb on - strand at 23.161 kb on - strand at 23.161 kb on - strand at 23.161 kb on - strand at 23.161 kb on - strand at 23.163 kb on - strand at 23.183 kb on - strand, within GFF1813 at 23.403 kb on + strand, within GFF1813 at 23.403 kb on + strand, within GFF1813 at 23.403 kb on + strand, within GFF1813 at 23.403 kb on + strand, within GFF1813 at 23.404 kb on - strand, within GFF1813 at 23.404 kb on - strand, within GFF1813 at 23.652 kb on + strand, within GFF1813 at 23.653 kb on - strand, within GFF1813 at 23.653 kb on - strand, within GFF1813 at 23.832 kb on + strand, within GFF1813 at 23.833 kb on - strand, within GFF1813 at 24.289 kb on - strand, within GFF1813 at 24.327 kb on + strand, within GFF1813 at 24.367 kb on + strand at 24.368 kb on - strand at 24.368 kb on - strand at 24.368 kb on - strand at 24.459 kb on + strand at 24.460 kb on - strand at 24.474 kb on + strand at 24.474 kb on + strand at 24.475 kb on - strand at 24.475 kb on - strand at 24.475 kb on - strand at 24.475 kb on - strand at 24.475 kb on - strand at 24.512 kb on + strand at 24.512 kb on + strand at 24.512 kb on + strand at 24.512 kb on + strand at 24.512 kb on + strand at 24.512 kb on + strand at 24.512 kb on + strand at 24.513 kb on - strand at 24.513 kb on - strand at 24.513 kb on - strand at 24.513 kb on - strand at 24.513 kb on - strand at 24.654 kb on + strand at 24.654 kb on + strand at 24.655 kb on - strand at 24.655 kb on - strand at 24.655 kb on - strand at 25.107 kb on + strand, within GFF1814 at 25.107 kb on + strand, within GFF1814 at 25.107 kb on + strand, within GFF1814 at 25.107 kb on + strand, within GFF1814 at 25.108 kb on - strand, within GFF1814 at 25.108 kb on - strand, within GFF1814 at 25.108 kb on - strand, within GFF1814 at 25.248 kb on + strand, within GFF1814 at 25.248 kb on + strand, within GFF1814 at 25.248 kb on + strand, within GFF1814 at 25.416 kb on + strand, within GFF1814 at 25.417 kb on - strand, within GFF1814 at 25.464 kb on + strand, within GFF1814 at 25.464 kb on + strand, within GFF1814 at 25.467 kb on + strand, within GFF1814
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 22,107 + GFF1811 0.52 -1.4 22,108 - GFF1811 0.52 +0.8 22,339 + +0.4 22,339 + -1.8 22,339 + -0.8 22,340 - -1.0 22,395 - +1.3 22,395 - +0.0 22,511 + GFF1812 0.22 +0.6 22,512 - GFF1812 0.22 -0.9 22,609 - GFF1812 0.38 +0.3 22,623 + GFF1812 0.40 +0.0 22,623 + GFF1812 0.40 -0.1 22,624 - GFF1812 0.41 -1.3 22,886 + GFF1812 0.84 +0.5 22,887 - GFF1812 0.85 +0.5 22,947 + +0.4 22,947 + -1.5 23,160 + +0.4 23,160 + -3.1 23,160 + +0.5 23,160 + +0.0 23,160 + -0.1 23,161 - -0.7 23,161 - -0.9 23,161 - +0.8 23,161 - -1.4 23,161 - -0.1 23,161 - -0.9 23,161 - -0.4 23,163 - -0.2 23,183 - GFF1813 0.10 -0.7 23,403 + GFF1813 0.25 +0.5 23,403 + GFF1813 0.25 +0.4 23,403 + GFF1813 0.25 -0.0 23,403 + GFF1813 0.25 -0.4 23,404 - GFF1813 0.25 +1.6 23,404 - GFF1813 0.25 +0.0 23,652 + GFF1813 0.42 -1.0 23,653 - GFF1813 0.42 -0.5 23,653 - GFF1813 0.42 -1.2 23,832 + GFF1813 0.55 -1.0 23,833 - GFF1813 0.55 +0.0 24,289 - GFF1813 0.86 -0.4 24,327 + GFF1813 0.88 -0.4 24,367 + -0.1 24,368 - -1.0 24,368 - +0.6 24,368 - -1.1 24,459 + +0.1 24,460 - -0.3 24,474 + +0.2 24,474 + -0.4 24,475 - -1.0 24,475 - +0.2 24,475 - -0.5 24,475 - -2.1 24,475 - -0.5 24,512 + -1.5 24,512 + +0.7 24,512 + -0.3 24,512 + -0.9 24,512 + +0.6 24,512 + -0.7 24,512 + +0.4 24,513 - +0.5 24,513 - -1.0 24,513 - -0.8 24,513 - +0.2 24,513 - -0.4 24,654 + -1.0 24,654 + +0.9 24,655 - -0.1 24,655 - +0.9 24,655 - +0.1 25,107 + GFF1814 0.14 +1.2 25,107 + GFF1814 0.14 -0.4 25,107 + GFF1814 0.14 -0.4 25,107 + GFF1814 0.14 -1.4 25,108 - GFF1814 0.14 -1.4 25,108 - GFF1814 0.14 +0.3 25,108 - GFF1814 0.14 -1.0 25,248 + GFF1814 0.18 -0.5 25,248 + GFF1814 0.18 -0.4 25,248 + GFF1814 0.18 -0.2 25,416 + GFF1814 0.22 -0.5 25,417 - GFF1814 0.22 -0.6 25,464 + GFF1814 0.24 +0.2 25,464 + GFF1814 0.24 -0.8 25,467 + GFF1814 0.24 +0.4
Or see this region's nucleotide sequence