Strain Fitness in Pseudomonas sp. DMC3 around GFF1752

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1749 and GFF1750 are separated by 3 nucleotidesGFF1750 and GFF1751 are separated by 218 nucleotidesGFF1751 and GFF1752 are separated by 56 nucleotidesGFF1752 and GFF1753 are separated by 184 nucleotidesGFF1753 and GFF1754 are separated by 189 nucleotides GFF1749 - hypothetical protein, at 537,760 to 538,002 GFF1749 GFF1750 - RNA pyrophosphohydrolase, at 538,006 to 538,368 GFF1750 GFF1751 - hypothetical protein, at 538,587 to 538,784 GFF1751 GFF1752 - hypothetical protein, at 538,841 to 539,080 GFF1752 GFF1753 - hypothetical protein, at 539,265 to 539,600 GFF1753 GFF1754 - hypothetical protein, at 539,790 to 540,395 GFF1754 Position (kb) 538 539 540Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 537.862 kb on + strand, within GFF1749at 537.862 kb on + strand, within GFF1749at 537.862 kb on + strand, within GFF1749at 537.862 kb on + strand, within GFF1749at 537.863 kb on - strand, within GFF1749at 537.863 kb on - strand, within GFF1749at 537.863 kb on - strand, within GFF1749at 537.863 kb on - strand, within GFF1749at 537.863 kb on - strand, within GFF1749at 537.863 kb on - strand, within GFF1749at 537.863 kb on - strand, within GFF1749at 537.863 kb on - strand, within GFF1749at 537.863 kb on - strand, within GFF1749at 537.863 kb on - strand, within GFF1749at 538.010 kb on - strandat 538.151 kb on + strand, within GFF1750at 538.151 kb on + strand, within GFF1750at 538.151 kb on + strand, within GFF1750at 538.151 kb on + strand, within GFF1750at 538.152 kb on - strand, within GFF1750at 538.152 kb on - strand, within GFF1750at 538.152 kb on - strand, within GFF1750at 538.152 kb on - strand, within GFF1750at 538.152 kb on - strand, within GFF1750at 538.152 kb on - strand, within GFF1750at 538.168 kb on - strand, within GFF1750at 538.193 kb on + strand, within GFF1750at 538.316 kb on - strand, within GFF1750at 538.360 kb on + strandat 538.401 kb on - strandat 538.436 kb on - strandat 538.515 kb on + strandat 538.538 kb on + strandat 538.538 kb on + strandat 538.538 kb on + strandat 538.538 kb on + strandat 538.538 kb on + strandat 538.538 kb on + strandat 538.538 kb on + strandat 538.539 kb on - strandat 538.539 kb on - strandat 538.539 kb on - strandat 538.539 kb on - strandat 538.539 kb on - strandat 538.539 kb on - strandat 538.539 kb on - strandat 538.543 kb on + strandat 538.543 kb on + strandat 538.544 kb on - strandat 538.627 kb on - strand, within GFF1751at 538.637 kb on + strand, within GFF1751at 538.638 kb on - strand, within GFF1751at 538.720 kb on - strand, within GFF1751at 538.740 kb on + strand, within GFF1751at 538.740 kb on + strand, within GFF1751at 538.741 kb on - strand, within GFF1751at 538.741 kb on - strand, within GFF1751at 538.790 kb on + strandat 538.790 kb on + strandat 538.790 kb on + strandat 538.790 kb on + strandat 538.790 kb on + strandat 538.791 kb on - strandat 538.791 kb on - strandat 538.791 kb on - strandat 538.877 kb on + strand, within GFF1752at 538.877 kb on + strand, within GFF1752at 538.877 kb on + strand, within GFF1752at 538.890 kb on + strand, within GFF1752at 538.891 kb on - strand, within GFF1752at 538.891 kb on - strand, within GFF1752at 538.891 kb on - strand, within GFF1752at 538.891 kb on - strand, within GFF1752at 539.065 kb on - strandat 539.065 kb on - strandat 539.065 kb on - strandat 539.104 kb on + strandat 539.114 kb on + strandat 539.226 kb on - strandat 539.232 kb on + strandat 539.233 kb on - strandat 539.233 kb on - strandat 539.257 kb on + strandat 539.257 kb on + strandat 539.258 kb on - strandat 539.258 kb on - strandat 539.258 kb on - strandat 539.382 kb on + strand, within GFF1753at 539.383 kb on - strand, within GFF1753at 539.383 kb on - strand, within GFF1753at 539.477 kb on + strand, within GFF1753at 539.511 kb on + strand, within GFF1753at 539.512 kb on - strand, within GFF1753at 539.512 kb on - strand, within GFF1753at 539.512 kb on - strand, within GFF1753at 539.512 kb on - strand, within GFF1753at 539.512 kb on - strand, within GFF1753at 539.512 kb on - strand, within GFF1753at 539.538 kb on + strand, within GFF1753at 539.539 kb on - strand, within GFF1753at 539.664 kb on + strandat 539.665 kb on - strandat 539.733 kb on + strandat 539.734 kb on - strandat 539.734 kb on - strandat 539.734 kb on - strandat 539.734 kb on - strandat 539.829 kb on + strandat 539.830 kb on - strandat 539.830 kb on - strandat 539.830 kb on - strandat 539.833 kb on + strandat 539.833 kb on + strandat 539.833 kb on + strandat 539.833 kb on + strandat 539.834 kb on - strandat 539.848 kb on + strandat 539.849 kb on - strandat 539.849 kb on - strandat 539.865 kb on + strand, within GFF1754at 539.866 kb on - strand, within GFF1754at 539.866 kb on - strand, within GFF1754at 539.866 kb on - strand, within GFF1754at 539.894 kb on + strand, within GFF1754at 539.894 kb on + strand, within GFF1754at 539.923 kb on + strand, within GFF1754at 539.923 kb on + strand, within GFF1754at 539.923 kb on + strand, within GFF1754at 539.923 kb on + strand, within GFF1754at 539.924 kb on - strand, within GFF1754at 539.924 kb on - strand, within GFF1754at 539.924 kb on - strand, within GFF1754at 539.924 kb on - strand, within GFF1754at 539.927 kb on + strand, within GFF1754at 539.927 kb on + strand, within GFF1754at 539.927 kb on + strand, within GFF1754at 539.928 kb on - strand, within GFF1754at 539.974 kb on + strand, within GFF1754at 540.001 kb on + strand, within GFF1754at 540.075 kb on + strand, within GFF1754at 540.075 kb on + strand, within GFF1754at 540.076 kb on - strand, within GFF1754

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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537,862 + GFF1749 0.42 -1.3
537,862 + GFF1749 0.42 +0.0
537,862 + GFF1749 0.42 +0.1
537,862 + GFF1749 0.42 -1.2
537,863 - GFF1749 0.42 +0.1
537,863 - GFF1749 0.42 +0.3
537,863 - GFF1749 0.42 -0.3
537,863 - GFF1749 0.42 -2.1
537,863 - GFF1749 0.42 -0.8
537,863 - GFF1749 0.42 -0.8
537,863 - GFF1749 0.42 -0.4
537,863 - GFF1749 0.42 -0.2
537,863 - GFF1749 0.42 -0.1
537,863 - GFF1749 0.42 -1.0
538,010 - +0.1
538,151 + GFF1750 0.40 -0.3
538,151 + GFF1750 0.40 +0.0
538,151 + GFF1750 0.40 -1.3
538,151 + GFF1750 0.40 -0.1
538,152 - GFF1750 0.40 +0.3
538,152 - GFF1750 0.40 +0.3
538,152 - GFF1750 0.40 +0.3
538,152 - GFF1750 0.40 +0.5
538,152 - GFF1750 0.40 -0.4
538,152 - GFF1750 0.40 +0.6
538,168 - GFF1750 0.45 +0.1
538,193 + GFF1750 0.52 -1.8
538,316 - GFF1750 0.85 +0.3
538,360 + -0.6
538,401 - -0.1
538,436 - +0.0
538,515 + +0.5
538,538 + -0.5
538,538 + +0.3
538,538 + +0.0
538,538 + +0.5
538,538 + -1.3
538,538 + +2.1
538,538 + -0.2
538,539 - -0.7
538,539 - +0.3
538,539 - -1.3
538,539 - -0.1
538,539 - -0.6
538,539 - -1.1
538,539 - -0.0
538,543 + -0.2
538,543 + +0.1
538,544 - +0.1
538,627 - GFF1751 0.20 -0.6
538,637 + GFF1751 0.25 +0.0
538,638 - GFF1751 0.26 -0.6
538,720 - GFF1751 0.67 -0.8
538,740 + GFF1751 0.77 +0.3
538,740 + GFF1751 0.77 -3.0
538,741 - GFF1751 0.78 -0.4
538,741 - GFF1751 0.78 -0.1
538,790 + +0.2
538,790 + -0.9
538,790 + -0.1
538,790 + -0.7
538,790 + -2.3
538,791 - +0.5
538,791 - +0.3
538,791 - -0.6
538,877 + GFF1752 0.15 +0.2
538,877 + GFF1752 0.15 -0.8
538,877 + GFF1752 0.15 -0.6
538,890 + GFF1752 0.20 +0.5
538,891 - GFF1752 0.21 -1.1
538,891 - GFF1752 0.21 -1.1
538,891 - GFF1752 0.21 -1.3
538,891 - GFF1752 0.21 -0.9
539,065 - -0.6
539,065 - +0.2
539,065 - +1.2
539,104 + -0.1
539,114 + -2.6
539,226 - -0.6
539,232 + -1.0
539,233 - -0.1
539,233 - -0.3
539,257 + +0.1
539,257 + +0.5
539,258 - +0.6
539,258 - -0.5
539,258 - -0.4
539,382 + GFF1753 0.35 +1.0
539,383 - GFF1753 0.35 -0.4
539,383 - GFF1753 0.35 -0.5
539,477 + GFF1753 0.63 +1.2
539,511 + GFF1753 0.73 -2.0
539,512 - GFF1753 0.74 -0.5
539,512 - GFF1753 0.74 +0.4
539,512 - GFF1753 0.74 -0.4
539,512 - GFF1753 0.74 -0.5
539,512 - GFF1753 0.74 -0.1
539,512 - GFF1753 0.74 +0.2
539,538 + GFF1753 0.81 -1.1
539,539 - GFF1753 0.82 +0.3
539,664 + -0.8
539,665 - -0.8
539,733 + -0.3
539,734 - +0.1
539,734 - -2.9
539,734 - -0.2
539,734 - -0.2
539,829 + -0.2
539,830 - -1.8
539,830 - -1.1
539,830 - +0.1
539,833 + -0.5
539,833 + -0.6
539,833 + -0.0
539,833 + +0.0
539,834 - -1.4
539,848 + -0.6
539,849 - +1.5
539,849 - -1.2
539,865 + GFF1754 0.12 +0.5
539,866 - GFF1754 0.13 -2.0
539,866 - GFF1754 0.13 +0.1
539,866 - GFF1754 0.13 +0.3
539,894 + GFF1754 0.17 +0.3
539,894 + GFF1754 0.17 -0.3
539,923 + GFF1754 0.22 -0.0
539,923 + GFF1754 0.22 +0.3
539,923 + GFF1754 0.22 -0.9
539,923 + GFF1754 0.22 +0.4
539,924 - GFF1754 0.22 -0.5
539,924 - GFF1754 0.22 +1.2
539,924 - GFF1754 0.22 -1.0
539,924 - GFF1754 0.22 -1.0
539,927 + GFF1754 0.23 -0.1
539,927 + GFF1754 0.23 +0.4
539,927 + GFF1754 0.23 +0.9
539,928 - GFF1754 0.23 -0.1
539,974 + GFF1754 0.30 +0.2
540,001 + GFF1754 0.35 -0.3
540,075 + GFF1754 0.47 -2.1
540,075 + GFF1754 0.47 -0.1
540,076 - GFF1754 0.47 +0.2

Or see this region's nucleotide sequence