Strain Fitness in Pseudomonas sp. DMC3 around GFF1739

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1738 and GFF1739 are separated by 170 nucleotidesGFF1739 and GFF1740 are separated by 214 nucleotidesGFF1740 and GFF1741 are separated by 0 nucleotides GFF1738 - NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic, at 526,242 to 529,160 GFF1738 GFF1739 - hypothetical protein, at 529,331 to 530,263 GFF1739 GFF1740 - hypothetical protein, at 530,478 to 530,915 GFF1740 GFF1741 - hypothetical protein, at 530,916 to 532,319 GFF1741 Position (kb) 529 530 531Strain fitness (log2 ratio) -2 -1 0 1at 528.346 kb on + strand, within GFF1738at 528.346 kb on + strand, within GFF1738at 528.347 kb on - strand, within GFF1738at 528.347 kb on - strand, within GFF1738at 528.347 kb on - strand, within GFF1738at 528.347 kb on - strand, within GFF1738at 528.433 kb on + strand, within GFF1738at 528.434 kb on - strand, within GFF1738at 528.434 kb on - strand, within GFF1738at 528.544 kb on + strand, within GFF1738at 528.598 kb on + strand, within GFF1738at 528.598 kb on + strand, within GFF1738at 528.598 kb on + strand, within GFF1738at 528.599 kb on - strand, within GFF1738at 528.599 kb on - strand, within GFF1738at 528.645 kb on + strand, within GFF1738at 528.645 kb on + strand, within GFF1738at 528.646 kb on - strand, within GFF1738at 528.646 kb on - strand, within GFF1738at 528.646 kb on - strand, within GFF1738at 528.677 kb on + strand, within GFF1738at 528.677 kb on + strand, within GFF1738at 528.677 kb on + strand, within GFF1738at 528.677 kb on + strand, within GFF1738at 528.677 kb on + strand, within GFF1738at 528.677 kb on + strand, within GFF1738at 528.678 kb on - strand, within GFF1738at 528.678 kb on - strand, within GFF1738at 528.679 kb on + strand, within GFF1738at 528.679 kb on + strand, within GFF1738at 528.679 kb on + strand, within GFF1738at 528.679 kb on + strand, within GFF1738at 528.679 kb on + strand, within GFF1738at 528.679 kb on + strand, within GFF1738at 528.679 kb on + strand, within GFF1738at 528.679 kb on + strand, within GFF1738at 528.679 kb on + strand, within GFF1738at 528.679 kb on + strand, within GFF1738at 528.679 kb on + strand, within GFF1738at 528.679 kb on + strand, within GFF1738at 528.679 kb on + strand, within GFF1738at 528.679 kb on + strand, within GFF1738at 528.679 kb on + strand, within GFF1738at 528.680 kb on - strand, within GFF1738at 528.680 kb on - strand, within GFF1738at 528.680 kb on - strand, within GFF1738at 528.680 kb on - strand, within GFF1738at 528.680 kb on - strand, within GFF1738at 528.680 kb on - strand, within GFF1738at 528.680 kb on - strand, within GFF1738at 528.680 kb on - strand, within GFF1738at 528.680 kb on - strand, within GFF1738at 528.680 kb on - strand, within GFF1738at 528.680 kb on - strand, within GFF1738at 528.680 kb on - strand, within GFF1738at 528.680 kb on - strand, within GFF1738at 528.680 kb on - strand, within GFF1738at 528.680 kb on - strand, within GFF1738at 528.865 kb on + strand, within GFF1738at 528.865 kb on + strand, within GFF1738at 528.865 kb on + strand, within GFF1738at 528.865 kb on + strand, within GFF1738at 528.865 kb on + strand, within GFF1738at 528.865 kb on + strand, within GFF1738at 528.865 kb on + strand, within GFF1738at 528.866 kb on - strand, within GFF1738at 528.866 kb on - strand, within GFF1738at 528.866 kb on - strand, within GFF1738at 528.866 kb on - strand, within GFF1738at 528.866 kb on - strand, within GFF1738at 528.866 kb on - strand, within GFF1738at 528.866 kb on - strand, within GFF1738at 528.877 kb on + strandat 528.877 kb on + strandat 528.878 kb on - strandat 528.878 kb on - strandat 528.879 kb on + strandat 528.879 kb on + strandat 528.879 kb on + strandat 528.880 kb on - strandat 528.880 kb on - strandat 528.880 kb on - strandat 528.880 kb on - strandat 528.880 kb on - strandat 528.880 kb on - strandat 528.880 kb on - strandat 528.880 kb on - strandat 528.880 kb on - strandat 528.893 kb on + strandat 528.893 kb on + strandat 528.894 kb on - strandat 529.021 kb on + strandat 529.143 kb on + strandat 529.144 kb on - strandat 529.160 kb on + strandat 529.160 kb on + strandat 529.160 kb on + strandat 529.161 kb on - strandat 529.161 kb on - strandat 529.161 kb on - strandat 529.169 kb on - strandat 529.169 kb on - strandat 529.195 kb on + strandat 529.195 kb on + strandat 529.195 kb on + strandat 529.196 kb on - strandat 529.196 kb on - strandat 529.249 kb on + strandat 529.249 kb on + strandat 529.249 kb on + strandat 529.249 kb on + strandat 529.250 kb on - strandat 529.403 kb on - strandat 529.506 kb on + strand, within GFF1739at 529.506 kb on + strand, within GFF1739at 529.506 kb on + strand, within GFF1739at 529.507 kb on - strand, within GFF1739at 529.650 kb on - strand, within GFF1739at 529.650 kb on - strand, within GFF1739at 529.864 kb on + strand, within GFF1739at 529.929 kb on + strand, within GFF1739at 529.929 kb on + strand, within GFF1739at 529.929 kb on + strand, within GFF1739at 529.929 kb on + strand, within GFF1739at 529.929 kb on + strand, within GFF1739at 529.930 kb on - strand, within GFF1739at 529.996 kb on - strand, within GFF1739at 530.281 kb on + strandat 530.281 kb on + strandat 530.281 kb on + strandat 530.281 kb on + strandat 530.282 kb on - strandat 530.282 kb on - strandat 530.282 kb on - strandat 530.282 kb on - strandat 530.319 kb on + strandat 530.319 kb on + strandat 530.319 kb on + strandat 530.320 kb on - strandat 530.348 kb on + strandat 530.349 kb on - strandat 530.351 kb on - strandat 530.351 kb on - strandat 530.486 kb on - strandat 530.653 kb on + strand, within GFF1740at 530.653 kb on + strand, within GFF1740at 530.653 kb on + strand, within GFF1740at 530.654 kb on - strand, within GFF1740at 530.654 kb on - strand, within GFF1740at 530.722 kb on - strand, within GFF1740at 530.763 kb on + strand, within GFF1740at 530.764 kb on - strand, within GFF1740at 530.767 kb on + strand, within GFF1740at 530.768 kb on - strand, within GFF1740at 530.819 kb on + strand, within GFF1740at 530.820 kb on - strand, within GFF1740at 530.820 kb on - strand, within GFF1740at 530.820 kb on - strand, within GFF1740at 530.862 kb on + strand, within GFF1740at 530.900 kb on + strandat 530.900 kb on + strandat 530.900 kb on + strandat 530.901 kb on - strandat 530.987 kb on - strandat 531.054 kb on + strandat 531.055 kb on - strandat 531.055 kb on - strandat 531.077 kb on + strand, within GFF1741at 531.077 kb on + strand, within GFF1741at 531.077 kb on + strand, within GFF1741at 531.077 kb on + strand, within GFF1741at 531.077 kb on + strand, within GFF1741at 531.077 kb on + strand, within GFF1741at 531.077 kb on + strand, within GFF1741at 531.077 kb on + strand, within GFF1741at 531.077 kb on + strand, within GFF1741at 531.077 kb on + strand, within GFF1741at 531.077 kb on + strand, within GFF1741at 531.078 kb on - strand, within GFF1741at 531.078 kb on - strand, within GFF1741at 531.240 kb on + strand, within GFF1741at 531.240 kb on + strand, within GFF1741at 531.240 kb on + strand, within GFF1741at 531.241 kb on - strand, within GFF1741at 531.241 kb on - strand, within GFF1741

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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528,346 + GFF1738 0.72 -1.7
528,346 + GFF1738 0.72 +0.9
528,347 - GFF1738 0.72 -0.4
528,347 - GFF1738 0.72 +0.5
528,347 - GFF1738 0.72 +0.6
528,347 - GFF1738 0.72 +0.3
528,433 + GFF1738 0.75 +0.1
528,434 - GFF1738 0.75 -0.6
528,434 - GFF1738 0.75 -0.4
528,544 + GFF1738 0.79 -0.5
528,598 + GFF1738 0.81 +0.3
528,598 + GFF1738 0.81 -0.1
528,598 + GFF1738 0.81 +0.1
528,599 - GFF1738 0.81 +0.5
528,599 - GFF1738 0.81 +0.4
528,645 + GFF1738 0.82 +0.5
528,645 + GFF1738 0.82 +0.1
528,646 - GFF1738 0.82 -0.5
528,646 - GFF1738 0.82 -0.0
528,646 - GFF1738 0.82 -0.1
528,677 + GFF1738 0.83 -0.8
528,677 + GFF1738 0.83 -0.6
528,677 + GFF1738 0.83 +0.1
528,677 + GFF1738 0.83 +0.3
528,677 + GFF1738 0.83 +0.9
528,677 + GFF1738 0.83 -0.0
528,678 - GFF1738 0.83 -0.3
528,678 - GFF1738 0.83 +0.4
528,679 + GFF1738 0.83 -0.4
528,679 + GFF1738 0.83 -0.1
528,679 + GFF1738 0.83 -0.5
528,679 + GFF1738 0.83 -0.6
528,679 + GFF1738 0.83 -1.1
528,679 + GFF1738 0.83 +0.6
528,679 + GFF1738 0.83 -1.2
528,679 + GFF1738 0.83 -0.3
528,679 + GFF1738 0.83 -0.2
528,679 + GFF1738 0.83 -0.5
528,679 + GFF1738 0.83 -1.8
528,679 + GFF1738 0.83 -0.5
528,679 + GFF1738 0.83 +0.5
528,679 + GFF1738 0.83 -0.2
528,679 + GFF1738 0.83 +0.2
528,680 - GFF1738 0.84 +0.6
528,680 - GFF1738 0.84 +0.7
528,680 - GFF1738 0.84 -0.5
528,680 - GFF1738 0.84 -0.3
528,680 - GFF1738 0.84 +0.7
528,680 - GFF1738 0.84 +1.6
528,680 - GFF1738 0.84 -0.0
528,680 - GFF1738 0.84 -0.6
528,680 - GFF1738 0.84 -0.2
528,680 - GFF1738 0.84 +0.1
528,680 - GFF1738 0.84 -1.5
528,680 - GFF1738 0.84 +0.5
528,680 - GFF1738 0.84 +0.5
528,680 - GFF1738 0.84 -0.7
528,680 - GFF1738 0.84 -1.0
528,865 + GFF1738 0.90 -0.5
528,865 + GFF1738 0.90 +0.4
528,865 + GFF1738 0.90 -1.8
528,865 + GFF1738 0.90 +0.0
528,865 + GFF1738 0.90 -0.2
528,865 + GFF1738 0.90 +0.1
528,865 + GFF1738 0.90 -0.2
528,866 - GFF1738 0.90 +0.4
528,866 - GFF1738 0.90 -2.6
528,866 - GFF1738 0.90 -0.7
528,866 - GFF1738 0.90 -0.0
528,866 - GFF1738 0.90 +0.1
528,866 - GFF1738 0.90 -0.1
528,866 - GFF1738 0.90 -0.1
528,877 + -0.6
528,877 + -0.6
528,878 - -1.0
528,878 - -2.4
528,879 + +0.6
528,879 + +0.5
528,879 + -0.1
528,880 - +0.1
528,880 - +0.4
528,880 - -1.5
528,880 - +0.3
528,880 - -0.1
528,880 - -0.5
528,880 - -0.5
528,880 - -0.2
528,880 - -0.4
528,893 + +0.0
528,893 + -0.9
528,894 - -1.0
529,021 + +0.2
529,143 + -1.5
529,144 - -0.8
529,160 + -0.5
529,160 + +0.4
529,160 + -1.6
529,161 - +0.6
529,161 - -2.2
529,161 - +0.2
529,169 - -0.1
529,169 - -1.8
529,195 + +0.3
529,195 + -0.1
529,195 + +0.5
529,196 - +0.4
529,196 - -0.1
529,249 + -2.1
529,249 + +0.3
529,249 + -2.7
529,249 + -0.4
529,250 - +1.3
529,403 - +1.0
529,506 + GFF1739 0.19 +0.2
529,506 + GFF1739 0.19 -0.6
529,506 + GFF1739 0.19 -1.1
529,507 - GFF1739 0.19 +0.2
529,650 - GFF1739 0.34 +1.0
529,650 - GFF1739 0.34 +0.1
529,864 + GFF1739 0.57 -0.6
529,929 + GFF1739 0.64 -0.9
529,929 + GFF1739 0.64 -1.0
529,929 + GFF1739 0.64 -0.8
529,929 + GFF1739 0.64 +0.1
529,929 + GFF1739 0.64 -0.8
529,930 - GFF1739 0.64 -0.6
529,996 - GFF1739 0.71 -0.2
530,281 + -0.5
530,281 + -0.4
530,281 + -0.2
530,281 + +0.5
530,282 - -1.7
530,282 - +0.4
530,282 - -0.1
530,282 - -0.5
530,319 + -0.5
530,319 + -0.8
530,319 + -0.7
530,320 - -1.1
530,348 + +0.4
530,349 - -0.2
530,351 - -0.5
530,351 - -0.3
530,486 - +0.8
530,653 + GFF1740 0.40 -1.0
530,653 + GFF1740 0.40 +0.6
530,653 + GFF1740 0.40 +0.3
530,654 - GFF1740 0.40 -0.6
530,654 - GFF1740 0.40 -0.9
530,722 - GFF1740 0.56 -0.0
530,763 + GFF1740 0.65 +0.2
530,764 - GFF1740 0.65 -0.1
530,767 + GFF1740 0.66 +0.4
530,768 - GFF1740 0.66 +0.7
530,819 + GFF1740 0.78 -1.5
530,820 - GFF1740 0.78 +0.5
530,820 - GFF1740 0.78 +0.5
530,820 - GFF1740 0.78 +0.8
530,862 + GFF1740 0.88 -0.6
530,900 + +0.5
530,900 + -0.1
530,900 + +0.2
530,901 - +0.9
530,987 - -0.5
531,054 + +0.3
531,055 - -1.5
531,055 - -0.6
531,077 + GFF1741 0.11 -1.1
531,077 + GFF1741 0.11 -0.5
531,077 + GFF1741 0.11 +0.2
531,077 + GFF1741 0.11 +0.9
531,077 + GFF1741 0.11 -0.1
531,077 + GFF1741 0.11 -1.8
531,077 + GFF1741 0.11 +0.5
531,077 + GFF1741 0.11 +0.5
531,077 + GFF1741 0.11 +0.4
531,077 + GFF1741 0.11 -0.1
531,077 + GFF1741 0.11 +1.5
531,078 - GFF1741 0.12 -0.2
531,078 - GFF1741 0.12 +0.3
531,240 + GFF1741 0.23 +1.0
531,240 + GFF1741 0.23 -1.0
531,240 + GFF1741 0.23 +0.5
531,241 - GFF1741 0.23 +0.5
531,241 - GFF1741 0.23 -0.1

Or see this region's nucleotide sequence