Strain Fitness in Pseudomonas sp. DMC3 around GFF171

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF170 and GFF171 are separated by 158 nucleotidesGFF171 and GFF172 are separated by 73 nucleotides GFF170 - Adenosylhomocysteinase, at 196,482 to 197,891 GFF170 GFF171 - 5,10-methylenetetrahydrofolate reductase, at 198,050 to 198,895 GFF171 GFF172 - hypothetical protein, at 198,969 to 200,051 GFF172 Position (kb) 198 199Strain fitness (log2 ratio) -2 -1 0 1at 197.889 kb on + strandat 197.889 kb on + strandat 197.890 kb on - strandat 197.890 kb on - strandat 197.890 kb on - strandat 197.947 kb on + strandat 197.947 kb on + strandat 198.027 kb on + strandat 198.028 kb on - strandat 198.028 kb on - strandat 198.028 kb on - strandat 198.028 kb on - strandat 198.043 kb on + strandat 198.044 kb on - strandat 198.146 kb on + strand, within GFF171at 198.146 kb on + strand, within GFF171at 198.146 kb on + strand, within GFF171at 198.146 kb on + strand, within GFF171at 198.146 kb on + strand, within GFF171at 198.146 kb on + strand, within GFF171at 198.146 kb on + strand, within GFF171at 198.146 kb on + strand, within GFF171at 198.146 kb on + strand, within GFF171at 198.147 kb on - strand, within GFF171at 198.147 kb on - strand, within GFF171at 198.147 kb on - strand, within GFF171at 198.147 kb on - strand, within GFF171at 198.147 kb on - strand, within GFF171at 198.173 kb on + strand, within GFF171at 198.173 kb on + strand, within GFF171at 198.174 kb on - strand, within GFF171at 198.244 kb on - strand, within GFF171at 198.312 kb on - strand, within GFF171at 198.312 kb on - strand, within GFF171at 198.494 kb on + strand, within GFF171at 198.494 kb on + strand, within GFF171at 198.495 kb on - strand, within GFF171at 198.560 kb on + strand, within GFF171at 198.560 kb on + strand, within GFF171at 198.561 kb on - strand, within GFF171at 198.561 kb on - strand, within GFF171at 198.561 kb on - strand, within GFF171at 198.581 kb on + strand, within GFF171at 198.582 kb on - strand, within GFF171at 198.582 kb on - strand, within GFF171at 198.582 kb on - strand, within GFF171at 198.659 kb on + strand, within GFF171at 198.660 kb on - strand, within GFF171at 198.660 kb on - strand, within GFF171at 198.660 kb on - strand, within GFF171at 198.834 kb on - strandat 198.958 kb on + strandat 198.958 kb on + strandat 198.958 kb on + strandat 198.959 kb on - strandat 198.959 kb on - strandat 198.959 kb on - strandat 199.008 kb on + strandat 199.009 kb on - strandat 199.009 kb on - strandat 199.032 kb on + strandat 199.033 kb on - strandat 199.033 kb on - strandat 199.033 kb on - strandat 199.033 kb on - strandat 199.033 kb on - strandat 199.247 kb on - strand, within GFF172at 199.286 kb on + strand, within GFF172at 199.356 kb on + strand, within GFF172at 199.356 kb on + strand, within GFF172at 199.357 kb on - strand, within GFF172at 199.357 kb on - strand, within GFF172at 199.359 kb on + strand, within GFF172at 199.359 kb on + strand, within GFF172at 199.360 kb on - strand, within GFF172at 199.360 kb on - strand, within GFF172at 199.395 kb on + strand, within GFF172at 199.396 kb on - strand, within GFF172at 199.555 kb on - strand, within GFF172at 199.636 kb on - strand, within GFF172at 199.738 kb on + strand, within GFF172at 199.738 kb on + strand, within GFF172at 199.739 kb on - strand, within GFF172at 199.775 kb on + strand, within GFF172at 199.775 kb on + strand, within GFF172at 199.775 kb on + strand, within GFF172at 199.775 kb on + strand, within GFF172at 199.775 kb on + strand, within GFF172at 199.775 kb on + strand, within GFF172at 199.776 kb on - strand, within GFF172at 199.776 kb on - strand, within GFF172at 199.776 kb on - strand, within GFF172at 199.782 kb on + strand, within GFF172at 199.851 kb on + strand, within GFF172at 199.852 kb on - strand, within GFF172at 199.852 kb on - strand, within GFF172

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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197,889 + -0.9
197,889 + +0.4
197,890 - +0.7
197,890 - -0.6
197,890 - +0.1
197,947 + -0.7
197,947 + -0.3
198,027 + -0.5
198,028 - +1.3
198,028 - -0.4
198,028 - +0.7
198,028 - +0.3
198,043 + -0.9
198,044 - -1.2
198,146 + GFF171 0.11 -0.6
198,146 + GFF171 0.11 +0.1
198,146 + GFF171 0.11 -0.3
198,146 + GFF171 0.11 -1.3
198,146 + GFF171 0.11 -0.5
198,146 + GFF171 0.11 -0.6
198,146 + GFF171 0.11 +0.5
198,146 + GFF171 0.11 +0.4
198,146 + GFF171 0.11 -0.4
198,147 - GFF171 0.11 +0.4
198,147 - GFF171 0.11 +1.2
198,147 - GFF171 0.11 -0.6
198,147 - GFF171 0.11 +1.3
198,147 - GFF171 0.11 -1.3
198,173 + GFF171 0.15 -0.7
198,173 + GFF171 0.15 +0.2
198,174 - GFF171 0.15 -0.3
198,244 - GFF171 0.23 +0.1
198,312 - GFF171 0.31 +1.4
198,312 - GFF171 0.31 +1.0
198,494 + GFF171 0.52 -2.5
198,494 + GFF171 0.52 -0.8
198,495 - GFF171 0.53 -2.1
198,560 + GFF171 0.60 +1.3
198,560 + GFF171 0.60 -1.5
198,561 - GFF171 0.60 +0.6
198,561 - GFF171 0.60 -1.6
198,561 - GFF171 0.60 -1.0
198,581 + GFF171 0.63 -0.4
198,582 - GFF171 0.63 -0.6
198,582 - GFF171 0.63 -0.6
198,582 - GFF171 0.63 -0.3
198,659 + GFF171 0.72 +0.1
198,660 - GFF171 0.72 -0.3
198,660 - GFF171 0.72 +1.0
198,660 - GFF171 0.72 -1.3
198,834 - +0.7
198,958 + +0.7
198,958 + -2.1
198,958 + -1.1
198,959 - +0.0
198,959 - +0.4
198,959 - -1.3
199,008 + -0.0
199,009 - +0.5
199,009 - +1.7
199,032 + -1.1
199,033 - -0.3
199,033 - -2.0
199,033 - +1.0
199,033 - +0.3
199,033 - +0.3
199,247 - GFF172 0.26 -0.8
199,286 + GFF172 0.29 -0.2
199,356 + GFF172 0.36 -0.2
199,356 + GFF172 0.36 -0.3
199,357 - GFF172 0.36 +0.3
199,357 - GFF172 0.36 -1.3
199,359 + GFF172 0.36 +0.4
199,359 + GFF172 0.36 +0.3
199,360 - GFF172 0.36 +0.2
199,360 - GFF172 0.36 +0.5
199,395 + GFF172 0.39 +0.2
199,396 - GFF172 0.39 +0.6
199,555 - GFF172 0.54 +1.0
199,636 - GFF172 0.62 +0.3
199,738 + GFF172 0.71 -0.8
199,738 + GFF172 0.71 -0.6
199,739 - GFF172 0.71 +0.3
199,775 + GFF172 0.74 -2.4
199,775 + GFF172 0.74 +0.1
199,775 + GFF172 0.74 +1.2
199,775 + GFF172 0.74 -0.1
199,775 + GFF172 0.74 +1.0
199,775 + GFF172 0.74 -0.3
199,776 - GFF172 0.75 -0.0
199,776 - GFF172 0.75 +0.1
199,776 - GFF172 0.75 -1.3
199,782 + GFF172 0.75 -2.6
199,851 + GFF172 0.81 +0.6
199,852 - GFF172 0.82 +0.3
199,852 - GFF172 0.82 -0.4

Or see this region's nucleotide sequence