Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1693 and GFF1694 are separated by 156 nucleotides GFF1694 and GFF1695 are separated by 226 nucleotides GFF1695 and GFF1696 are separated by 52 nucleotides GFF1696 and GFF1697 are separated by 251 nucleotides
GFF1693 - 2-ketogluconate reductase, at 484,741 to 485,709
GFF1693
GFF1694 - hypothetical protein, at 485,866 to 486,249
GFF1694
GFF1695 - hypothetical protein, at 486,476 to 486,670
GFF1695
GFF1696 - hypothetical protein, at 486,723 to 486,893
GFF1696
GFF1697 - Serine transporter, at 487,145 to 488,425
GFF1697
Position (kb) 485
486
487 Strain fitness (log2 ratio) -2
-1
0
1 at 484.967 kb on - strand, within GFF1693 at 484.968 kb on + strand, within GFF1693 at 484.968 kb on + strand, within GFF1693 at 484.969 kb on - strand, within GFF1693 at 484.969 kb on - strand, within GFF1693 at 485.004 kb on + strand, within GFF1693 at 485.037 kb on + strand, within GFF1693 at 485.091 kb on + strand, within GFF1693 at 485.201 kb on + strand, within GFF1693 at 485.201 kb on + strand, within GFF1693 at 485.201 kb on + strand, within GFF1693 at 485.500 kb on + strand, within GFF1693 at 485.666 kb on + strand at 485.667 kb on - strand at 485.667 kb on - strand at 485.667 kb on - strand at 485.842 kb on + strand at 485.842 kb on + strand at 485.843 kb on - strand at 485.843 kb on - strand at 485.876 kb on + strand at 485.876 kb on + strand at 485.877 kb on - strand at 485.877 kb on - strand at 485.917 kb on + strand, within GFF1694 at 486.156 kb on + strand, within GFF1694 at 486.177 kb on - strand, within GFF1694 at 486.265 kb on + strand at 486.265 kb on + strand at 486.266 kb on - strand at 486.282 kb on + strand at 486.282 kb on + strand at 486.282 kb on + strand at 486.308 kb on + strand at 486.308 kb on + strand at 486.309 kb on - strand at 486.309 kb on - strand at 486.309 kb on - strand at 486.339 kb on - strand at 486.339 kb on - strand at 486.350 kb on + strand at 486.350 kb on + strand at 486.351 kb on - strand at 486.351 kb on - strand at 486.351 kb on - strand at 486.351 kb on - strand at 486.351 kb on - strand at 486.351 kb on - strand at 486.351 kb on - strand at 486.443 kb on + strand at 486.443 kb on + strand at 486.443 kb on + strand at 486.443 kb on + strand at 486.450 kb on + strand at 486.451 kb on - strand at 486.528 kb on + strand, within GFF1695 at 486.529 kb on - strand, within GFF1695 at 486.529 kb on - strand, within GFF1695 at 486.593 kb on + strand, within GFF1695 at 486.593 kb on + strand, within GFF1695 at 486.593 kb on + strand, within GFF1695 at 486.594 kb on - strand, within GFF1695 at 486.594 kb on - strand, within GFF1695 at 486.594 kb on - strand, within GFF1695 at 486.666 kb on + strand at 486.666 kb on + strand at 486.666 kb on + strand at 486.667 kb on - strand at 486.667 kb on - strand at 486.667 kb on - strand at 486.689 kb on - strand at 486.728 kb on + strand at 486.728 kb on + strand at 486.728 kb on + strand at 486.728 kb on + strand at 486.728 kb on + strand at 486.728 kb on + strand at 486.728 kb on + strand at 486.728 kb on + strand at 486.729 kb on - strand at 486.729 kb on - strand at 486.729 kb on - strand at 486.729 kb on - strand at 486.780 kb on + strand, within GFF1696 at 486.781 kb on - strand, within GFF1696 at 486.781 kb on - strand, within GFF1696 at 486.784 kb on + strand, within GFF1696 at 486.784 kb on + strand, within GFF1696 at 486.784 kb on + strand, within GFF1696 at 486.784 kb on + strand, within GFF1696 at 486.784 kb on + strand, within GFF1696 at 486.784 kb on + strand, within GFF1696 at 486.784 kb on + strand, within GFF1696 at 486.785 kb on - strand, within GFF1696 at 486.785 kb on - strand, within GFF1696 at 486.785 kb on - strand, within GFF1696 at 486.785 kb on - strand, within GFF1696 at 486.785 kb on - strand, within GFF1696 at 486.785 kb on - strand, within GFF1696 at 486.794 kb on - strand, within GFF1696 at 487.019 kb on - strand at 487.162 kb on + strand at 487.163 kb on - strand at 487.163 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 484,967 - GFF1693 0.23 -0.0 484,968 + GFF1693 0.23 +0.1 484,968 + GFF1693 0.23 -0.8 484,969 - GFF1693 0.24 +0.7 484,969 - GFF1693 0.24 +0.0 485,004 + GFF1693 0.27 +0.2 485,037 + GFF1693 0.31 -0.3 485,091 + GFF1693 0.36 -1.3 485,201 + GFF1693 0.47 -0.8 485,201 + GFF1693 0.47 -0.0 485,201 + GFF1693 0.47 -0.4 485,500 + GFF1693 0.78 -0.4 485,666 + -1.3 485,667 - -0.3 485,667 - -0.6 485,667 - +1.5 485,842 + +1.2 485,842 + -0.2 485,843 - -0.6 485,843 - -0.1 485,876 + -0.6 485,876 + -0.7 485,877 - +0.2 485,877 - -0.1 485,917 + GFF1694 0.13 -0.5 486,156 + GFF1694 0.76 -0.6 486,177 - GFF1694 0.81 -1.1 486,265 + -0.6 486,265 + -0.4 486,266 - -0.5 486,282 + +0.1 486,282 + -0.2 486,282 + -1.1 486,308 + -0.6 486,308 + -0.2 486,309 - -0.0 486,309 - -0.8 486,309 - -0.4 486,339 - +0.8 486,339 - +0.6 486,350 + +0.6 486,350 + -0.3 486,351 - -0.6 486,351 - +0.1 486,351 - -0.4 486,351 - -2.2 486,351 - -1.0 486,351 - -0.6 486,351 - -0.5 486,443 + -1.1 486,443 + +0.3 486,443 + +0.5 486,443 + -0.6 486,450 + -0.4 486,451 - +0.2 486,528 + GFF1695 0.27 +0.9 486,529 - GFF1695 0.27 +0.3 486,529 - GFF1695 0.27 -0.2 486,593 + GFF1695 0.60 +0.5 486,593 + GFF1695 0.60 +0.4 486,593 + GFF1695 0.60 -0.3 486,594 - GFF1695 0.61 -1.1 486,594 - GFF1695 0.61 -0.5 486,594 - GFF1695 0.61 +0.0 486,666 + -0.8 486,666 + -1.1 486,666 + +0.0 486,667 - -0.3 486,667 - -0.5 486,667 - +0.6 486,689 - -0.5 486,728 + -0.3 486,728 + -0.5 486,728 + -0.5 486,728 + -0.1 486,728 + -0.3 486,728 + +0.1 486,728 + -0.8 486,728 + -0.5 486,729 - -1.8 486,729 - -0.0 486,729 - +0.3 486,729 - +0.4 486,780 + GFF1696 0.33 -0.3 486,781 - GFF1696 0.34 -1.7 486,781 - GFF1696 0.34 -0.9 486,784 + GFF1696 0.36 +0.2 486,784 + GFF1696 0.36 -0.4 486,784 + GFF1696 0.36 -1.3 486,784 + GFF1696 0.36 +0.5 486,784 + GFF1696 0.36 +0.0 486,784 + GFF1696 0.36 -1.1 486,784 + GFF1696 0.36 -0.1 486,785 - GFF1696 0.36 +0.7 486,785 - GFF1696 0.36 -0.3 486,785 - GFF1696 0.36 -0.8 486,785 - GFF1696 0.36 -0.4 486,785 - GFF1696 0.36 -0.4 486,785 - GFF1696 0.36 +0.5 486,794 - GFF1696 0.42 -1.1 487,019 - -0.1 487,162 + -0.3 487,163 - -1.0 487,163 - -0.9
Or see this region's nucleotide sequence