Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1593 and GFF1594 are separated by 101 nucleotides GFF1594 and GFF1595 are separated by 304 nucleotides
GFF1593 - HTH-type transcriptional regulator CdhR, at 376,215 to 377,204
GFF1593
GFF1594 - hypothetical protein, at 377,306 to 377,734
GFF1594
GFF1595 - Lysine/arginine/ornithine-binding periplasmic protein, at 378,039 to 378,818
GFF1595
Position (kb) 377
378 Strain fitness (log2 ratio) -2
-1
0
1
2 at 376.753 kb on + strand, within GFF1593 at 376.753 kb on + strand, within GFF1593 at 376.754 kb on - strand, within GFF1593 at 376.754 kb on - strand, within GFF1593 at 376.811 kb on - strand, within GFF1593 at 377.061 kb on - strand, within GFF1593 at 377.087 kb on - strand, within GFF1593 at 377.167 kb on + strand at 377.167 kb on + strand at 377.168 kb on - strand at 377.433 kb on - strand, within GFF1594 at 377.464 kb on - strand, within GFF1594 at 377.500 kb on + strand, within GFF1594 at 377.567 kb on + strand, within GFF1594 at 377.567 kb on + strand, within GFF1594 at 377.782 kb on + strand at 377.782 kb on + strand at 377.782 kb on + strand at 377.782 kb on + strand at 377.782 kb on + strand at 377.782 kb on + strand at 377.783 kb on - strand at 377.783 kb on - strand at 377.783 kb on - strand at 377.783 kb on - strand at 377.809 kb on - strand at 377.837 kb on - strand at 377.944 kb on + strand at 378.013 kb on + strand at 378.013 kb on + strand at 378.014 kb on - strand at 378.033 kb on + strand at 378.034 kb on - strand at 378.034 kb on - strand at 378.034 kb on - strand at 378.034 kb on - strand at 378.036 kb on + strand at 378.036 kb on + strand at 378.036 kb on + strand at 378.036 kb on + strand at 378.037 kb on - strand at 378.037 kb on - strand at 378.037 kb on - strand at 378.037 kb on - strand at 378.037 kb on - strand at 378.049 kb on + strand at 378.049 kb on + strand at 378.050 kb on - strand at 378.231 kb on - strand, within GFF1595 at 378.360 kb on + strand, within GFF1595 at 378.360 kb on + strand, within GFF1595 at 378.360 kb on + strand, within GFF1595 at 378.360 kb on + strand, within GFF1595 at 378.361 kb on - strand, within GFF1595 at 378.361 kb on - strand, within GFF1595 at 378.361 kb on - strand, within GFF1595 at 378.361 kb on - strand, within GFF1595 at 378.364 kb on - strand, within GFF1595 at 378.364 kb on - strand, within GFF1595 at 378.364 kb on - strand, within GFF1595 at 378.462 kb on - strand, within GFF1595 at 378.654 kb on + strand, within GFF1595 at 378.654 kb on + strand, within GFF1595 at 378.655 kb on - strand, within GFF1595 at 378.669 kb on + strand, within GFF1595 at 378.669 kb on + strand, within GFF1595
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 376,753 + GFF1593 0.54 -1.0 376,753 + GFF1593 0.54 +1.9 376,754 - GFF1593 0.54 +0.3 376,754 - GFF1593 0.54 +0.1 376,811 - GFF1593 0.60 +0.4 377,061 - GFF1593 0.85 -0.6 377,087 - GFF1593 0.88 +0.1 377,167 + -0.2 377,167 + +0.8 377,168 - +0.3 377,433 - GFF1594 0.30 -1.0 377,464 - GFF1594 0.37 -0.2 377,500 + GFF1594 0.45 -0.7 377,567 + GFF1594 0.61 -0.1 377,567 + GFF1594 0.61 -0.8 377,782 + -0.3 377,782 + -1.2 377,782 + +0.2 377,782 + +0.1 377,782 + -1.0 377,782 + -0.8 377,783 - -0.6 377,783 - -0.8 377,783 - -2.4 377,783 - -0.5 377,809 - -0.8 377,837 - -0.2 377,944 + +0.2 378,013 + -2.2 378,013 + +1.3 378,014 - +0.5 378,033 + -0.9 378,034 - -1.4 378,034 - -0.5 378,034 - -0.3 378,034 - -0.1 378,036 + -0.5 378,036 + -0.5 378,036 + -0.7 378,036 + -0.6 378,037 - +0.3 378,037 - +1.0 378,037 - +0.0 378,037 - -0.8 378,037 - +0.0 378,049 + +0.6 378,049 + +0.9 378,050 - -0.1 378,231 - GFF1595 0.25 +0.5 378,360 + GFF1595 0.41 -0.8 378,360 + GFF1595 0.41 -0.0 378,360 + GFF1595 0.41 +0.5 378,360 + GFF1595 0.41 -1.0 378,361 - GFF1595 0.41 +0.4 378,361 - GFF1595 0.41 -0.2 378,361 - GFF1595 0.41 +1.3 378,361 - GFF1595 0.41 +0.8 378,364 - GFF1595 0.42 -0.8 378,364 - GFF1595 0.42 -0.5 378,364 - GFF1595 0.42 +1.1 378,462 - GFF1595 0.54 -1.1 378,654 + GFF1595 0.79 +0.4 378,654 + GFF1595 0.79 -0.5 378,655 - GFF1595 0.79 -0.6 378,669 + GFF1595 0.81 -1.8 378,669 + GFF1595 0.81 +0.5
Or see this region's nucleotide sequence