Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1565 and GFF1566 are separated by 87 nucleotides GFF1566 and GFF1567 are separated by 59 nucleotides GFF1567 and GFF1568 are separated by 159 nucleotides
GFF1565 - Protein YceI, at 350,662 to 351,219
GFF1565
GFF1566 - hypothetical protein, at 351,307 to 351,993
GFF1566
GFF1567 - hypothetical protein, at 352,053 to 352,493
GFF1567
GFF1568 - hypothetical protein, at 352,653 to 353,285
GFF1568
Position (kb) 352
353 Strain fitness (log2 ratio) -2
-1
0
1 at 351.229 kb on - strand at 351.242 kb on + strand at 351.243 kb on - strand at 351.243 kb on - strand at 351.325 kb on + strand at 351.325 kb on + strand at 351.325 kb on + strand at 351.325 kb on + strand at 351.431 kb on - strand, within GFF1566 at 351.431 kb on - strand, within GFF1566 at 351.431 kb on - strand, within GFF1566 at 351.431 kb on - strand, within GFF1566 at 351.472 kb on + strand, within GFF1566 at 351.610 kb on + strand, within GFF1566 at 351.610 kb on + strand, within GFF1566 at 351.611 kb on - strand, within GFF1566 at 351.611 kb on - strand, within GFF1566 at 351.611 kb on - strand, within GFF1566 at 351.724 kb on + strand, within GFF1566 at 351.725 kb on - strand, within GFF1566 at 351.838 kb on + strand, within GFF1566 at 351.839 kb on - strand, within GFF1566 at 351.871 kb on + strand, within GFF1566 at 351.871 kb on + strand, within GFF1566 at 351.871 kb on + strand, within GFF1566 at 351.872 kb on - strand, within GFF1566 at 351.872 kb on - strand, within GFF1566 at 351.872 kb on - strand, within GFF1566 at 351.872 kb on - strand, within GFF1566 at 351.872 kb on - strand, within GFF1566 at 351.872 kb on - strand, within GFF1566 at 351.956 kb on + strand at 351.957 kb on - strand at 351.957 kb on - strand at 352.132 kb on - strand, within GFF1567 at 352.210 kb on + strand, within GFF1567 at 352.211 kb on - strand, within GFF1567 at 352.211 kb on - strand, within GFF1567 at 352.417 kb on + strand, within GFF1567 at 352.417 kb on + strand, within GFF1567 at 352.589 kb on + strand at 352.589 kb on + strand at 352.589 kb on + strand at 352.589 kb on + strand at 352.590 kb on - strand at 352.590 kb on - strand at 352.590 kb on - strand at 352.590 kb on - strand at 352.590 kb on - strand at 352.669 kb on + strand at 352.670 kb on - strand at 352.815 kb on + strand, within GFF1568 at 352.816 kb on - strand, within GFF1568 at 352.816 kb on - strand, within GFF1568 at 352.816 kb on - strand, within GFF1568 at 352.816 kb on - strand, within GFF1568 at 352.899 kb on + strand, within GFF1568 at 352.899 kb on + strand, within GFF1568 at 352.900 kb on - strand, within GFF1568 at 352.900 kb on - strand, within GFF1568 at 352.917 kb on - strand, within GFF1568 at 352.953 kb on + strand, within GFF1568 at 352.953 kb on + strand, within GFF1568 at 352.953 kb on + strand, within GFF1568 at 352.954 kb on - strand, within GFF1568 at 352.954 kb on - strand, within GFF1568 at 353.172 kb on + strand, within GFF1568 at 353.289 kb on - strand at 353.289 kb on - strand at 353.289 kb on - strand at 353.334 kb on + strand at 353.335 kb on - strand at 353.406 kb on - strand at 353.437 kb on - strand at 353.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 351,229 - -0.5 351,242 + -0.0 351,243 - +0.2 351,243 - -0.0 351,325 + -0.1 351,325 + +0.3 351,325 + +0.3 351,325 + -0.3 351,431 - GFF1566 0.18 -1.1 351,431 - GFF1566 0.18 -1.5 351,431 - GFF1566 0.18 +0.5 351,431 - GFF1566 0.18 -0.3 351,472 + GFF1566 0.24 +0.4 351,610 + GFF1566 0.44 +0.0 351,610 + GFF1566 0.44 +0.2 351,611 - GFF1566 0.44 -0.5 351,611 - GFF1566 0.44 +1.1 351,611 - GFF1566 0.44 +0.1 351,724 + GFF1566 0.61 -0.5 351,725 - GFF1566 0.61 -1.3 351,838 + GFF1566 0.77 -1.4 351,839 - GFF1566 0.77 +0.2 351,871 + GFF1566 0.82 -0.6 351,871 + GFF1566 0.82 +0.2 351,871 + GFF1566 0.82 -0.3 351,872 - GFF1566 0.82 -0.6 351,872 - GFF1566 0.82 +0.4 351,872 - GFF1566 0.82 +0.4 351,872 - GFF1566 0.82 -0.7 351,872 - GFF1566 0.82 -0.0 351,872 - GFF1566 0.82 -0.2 351,956 + +0.4 351,957 - -0.9 351,957 - +0.2 352,132 - GFF1567 0.18 -1.0 352,210 + GFF1567 0.36 -0.5 352,211 - GFF1567 0.36 -0.3 352,211 - GFF1567 0.36 -2.0 352,417 + GFF1567 0.83 -1.8 352,417 + GFF1567 0.83 +0.8 352,589 + -0.1 352,589 + -0.5 352,589 + +0.6 352,589 + +0.1 352,590 - -1.7 352,590 - -1.1 352,590 - -0.7 352,590 - +0.7 352,590 - -0.2 352,669 + +0.2 352,670 - -1.3 352,815 + GFF1568 0.26 +0.2 352,816 - GFF1568 0.26 +0.2 352,816 - GFF1568 0.26 -0.9 352,816 - GFF1568 0.26 -0.2 352,816 - GFF1568 0.26 -0.4 352,899 + GFF1568 0.39 +0.4 352,899 + GFF1568 0.39 -0.6 352,900 - GFF1568 0.39 -0.5 352,900 - GFF1568 0.39 +0.5 352,917 - GFF1568 0.42 -1.0 352,953 + GFF1568 0.47 +0.1 352,953 + GFF1568 0.47 +0.1 352,953 + GFF1568 0.47 -1.5 352,954 - GFF1568 0.48 +0.5 352,954 - GFF1568 0.48 -0.6 353,172 + GFF1568 0.82 -0.0 353,289 - -0.5 353,289 - -0.7 353,289 - -0.5 353,334 + -0.3 353,335 - -0.5 353,406 - +0.3 353,437 - -0.4 353,448 - -0.9
Or see this region's nucleotide sequence