Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1508 and GFF1509 overlap by 4 nucleotides GFF1509 and GFF1510 are separated by 2 nucleotides GFF1510 and GFF1511 are separated by 69 nucleotides GFF1511 and GFF1512 are separated by 10 nucleotides
GFF1508 - NADH-quinone oxidoreductase subunit F, at 292,841 to 294,196
GFF1508
GFF1509 - NADH-quinone oxidoreductase subunit E, at 294,193 to 294,690
GFF1509
GFF1510 - NADH-quinone oxidoreductase subunit C/D, at 294,693 to 296,477
GFF1510
GFF1511 - NADH-quinone oxidoreductase subunit B, at 296,547 to 297,221
GFF1511
GFF1512 - NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic, at 297,232 to 297,645
GFF1512
Position (kb) 294
295
296
297 Strain fitness (log2 ratio) -1
0
1 at 294.196 kb on + strand at 294.196 kb on + strand at 294.197 kb on - strand at 294.200 kb on + strand at 294.200 kb on + strand at 294.402 kb on - strand, within GFF1509 at 294.467 kb on + strand, within GFF1509 at 294.695 kb on - strand at 294.695 kb on - strand at 294.728 kb on + strand at 294.736 kb on + strand at 294.809 kb on + strand at 294.826 kb on + strand at 295.019 kb on - strand, within GFF1510 at 295.163 kb on - strand, within GFF1510 at 295.271 kb on + strand, within GFF1510 at 295.272 kb on - strand, within GFF1510 at 295.312 kb on + strand, within GFF1510 at 295.453 kb on + strand, within GFF1510 at 295.453 kb on + strand, within GFF1510 at 295.516 kb on + strand, within GFF1510 at 295.516 kb on + strand, within GFF1510 at 295.517 kb on - strand, within GFF1510 at 295.517 kb on - strand, within GFF1510 at 295.517 kb on - strand, within GFF1510 at 295.517 kb on - strand, within GFF1510 at 295.634 kb on - strand, within GFF1510 at 295.690 kb on + strand, within GFF1510 at 295.691 kb on - strand, within GFF1510 at 295.691 kb on - strand, within GFF1510 at 295.691 kb on - strand, within GFF1510 at 295.849 kb on + strand, within GFF1510 at 295.850 kb on - strand, within GFF1510 at 295.850 kb on - strand, within GFF1510 at 295.850 kb on - strand, within GFF1510 at 296.169 kb on - strand, within GFF1510 at 296.172 kb on - strand, within GFF1510 at 296.284 kb on + strand, within GFF1510 at 296.285 kb on - strand, within GFF1510 at 296.443 kb on + strand at 296.443 kb on + strand at 296.444 kb on - strand at 296.472 kb on - strand at 296.472 kb on - strand at 296.482 kb on - strand at 296.504 kb on + strand at 296.504 kb on + strand at 296.504 kb on + strand at 296.633 kb on - strand, within GFF1511 at 296.745 kb on + strand, within GFF1511 at 296.746 kb on - strand, within GFF1511 at 296.794 kb on + strand, within GFF1511 at 296.804 kb on - strand, within GFF1511 at 296.804 kb on - strand, within GFF1511 at 296.869 kb on + strand, within GFF1511 at 297.059 kb on + strand, within GFF1511 at 297.059 kb on + strand, within GFF1511 at 297.060 kb on - strand, within GFF1511 at 297.136 kb on - strand, within GFF1511 at 297.214 kb on + strand at 297.215 kb on - strand at 297.215 kb on - strand at 297.306 kb on - strand, within GFF1512 at 297.306 kb on - strand, within GFF1512
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 294,196 + -1.0 294,196 + -0.5 294,197 - +1.5 294,200 + -0.5 294,200 + -0.5 294,402 - GFF1509 0.42 -0.8 294,467 + GFF1509 0.55 -1.6 294,695 - +0.3 294,695 - -1.5 294,728 + -0.8 294,736 + -0.5 294,809 + +0.2 294,826 + -1.0 295,019 - GFF1510 0.18 +0.5 295,163 - GFF1510 0.26 -0.5 295,271 + GFF1510 0.32 -1.3 295,272 - GFF1510 0.32 +0.5 295,312 + GFF1510 0.35 -1.0 295,453 + GFF1510 0.43 +0.3 295,453 + GFF1510 0.43 -0.5 295,516 + GFF1510 0.46 -0.5 295,516 + GFF1510 0.46 +1.5 295,517 - GFF1510 0.46 -0.5 295,517 - GFF1510 0.46 +0.5 295,517 - GFF1510 0.46 -1.3 295,517 - GFF1510 0.46 -0.8 295,634 - GFF1510 0.53 -0.5 295,690 + GFF1510 0.56 -0.0 295,691 - GFF1510 0.56 -1.0 295,691 - GFF1510 0.56 +0.5 295,691 - GFF1510 0.56 +0.5 295,849 + GFF1510 0.65 +0.2 295,850 - GFF1510 0.65 +0.5 295,850 - GFF1510 0.65 -0.8 295,850 - GFF1510 0.65 -0.0 296,169 - GFF1510 0.83 -0.5 296,172 - GFF1510 0.83 -0.8 296,284 + GFF1510 0.89 +0.5 296,285 - GFF1510 0.89 +0.3 296,443 + -0.8 296,443 + +1.5 296,444 - -0.5 296,472 - -0.5 296,472 - -0.5 296,482 - +0.2 296,504 + +0.3 296,504 + +0.5 296,504 + +0.5 296,633 - GFF1511 0.13 -0.5 296,745 + GFF1511 0.29 +1.1 296,746 - GFF1511 0.29 -0.5 296,794 + GFF1511 0.37 -0.5 296,804 - GFF1511 0.38 -0.5 296,804 - GFF1511 0.38 -0.5 296,869 + GFF1511 0.48 -0.8 297,059 + GFF1511 0.76 -0.0 297,059 + GFF1511 0.76 -0.0 297,060 - GFF1511 0.76 +0.2 297,136 - GFF1511 0.87 -0.8 297,214 + +1.1 297,215 - -0.5 297,215 - +1.1 297,306 - GFF1512 0.18 -0.8 297,306 - GFF1512 0.18 -0.8
Or see this region's nucleotide sequence