Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1501 and GFF1502 are separated by 39 nucleotides GFF1502 and GFF1503 overlap by 4 nucleotides GFF1503 and GFF1504 are separated by 3 nucleotides GFF1504 and GFF1505 are separated by 9 nucleotides
GFF1501 - NADH-quinone oxidoreductase subunit M, at 284,182 to 285,714
GFF1501
GFF1502 - NADH-quinone oxidoreductase subunit L, at 285,754 to 287,607
GFF1502
GFF1503 - NADH-quinone oxidoreductase subunit K, at 287,604 to 287,912
GFF1503
GFF1504 - NADH-quinone oxidoreductase subunit J, at 287,916 to 288,416
GFF1504
GFF1505 - NADH-quinone oxidoreductase subunit I, at 288,426 to 288,974
GFF1505
Position (kb) 285
286
287
288 Strain fitness (log2 ratio) -2
-1
0
1 at 285.047 kb on + strand, within GFF1501 at 285.260 kb on + strand, within GFF1501 at 285.261 kb on - strand, within GFF1501 at 285.753 kb on - strand at 285.923 kb on - strand at 285.923 kb on - strand at 285.923 kb on - strand at 285.942 kb on - strand, within GFF1502 at 286.169 kb on - strand, within GFF1502 at 286.936 kb on + strand, within GFF1502 at 286.937 kb on - strand, within GFF1502 at 286.997 kb on - strand, within GFF1502 at 287.150 kb on + strand, within GFF1502 at 287.151 kb on - strand, within GFF1502 at 287.183 kb on + strand, within GFF1502 at 287.183 kb on + strand, within GFF1502 at 287.184 kb on - strand, within GFF1502 at 287.285 kb on + strand, within GFF1502 at 287.286 kb on - strand, within GFF1502 at 287.423 kb on + strand at 287.600 kb on - strand at 287.917 kb on + strand at 287.917 kb on + strand at 288.092 kb on - strand, within GFF1504
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 285,047 + GFF1501 0.56 -1.5 285,260 + GFF1501 0.70 -1.9 285,261 - GFF1501 0.70 +0.5 285,753 - -0.5 285,923 - -1.5 285,923 - -0.8 285,923 - +0.2 285,942 - GFF1502 0.10 -0.5 286,169 - GFF1502 0.22 -0.8 286,936 + GFF1502 0.64 +0.2 286,937 - GFF1502 0.64 -0.8 286,997 - GFF1502 0.67 -0.5 287,150 + GFF1502 0.75 -0.5 287,151 - GFF1502 0.75 -0.0 287,183 + GFF1502 0.77 +0.5 287,183 + GFF1502 0.77 -1.0 287,184 - GFF1502 0.77 +0.2 287,285 + GFF1502 0.83 -0.8 287,286 - GFF1502 0.83 -0.0 287,423 + -0.8 287,600 - +0.2 287,917 + +0.5 287,917 + -1.0 288,092 - GFF1504 0.35 +0.5
Or see this region's nucleotide sequence