Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1455 and GFF1456 are separated by 113 nucleotides GFF1456 and GFF1457 are separated by 125 nucleotides
GFF1455 - 2-aminoethylphosphonate--pyruvate transaminase, at 226,040 to 227,149
GFF1455
GFF1456 - HTH-type transcriptional regulator CysL, at 227,263 to 228,129
GFF1456
GFF1457 - HTH-type transcriptional activator CmpR, at 228,255 to 229,127
GFF1457
Position (kb) 227
228
229 Strain fitness (log2 ratio) -2
-1
0
1 at 226.380 kb on + strand, within GFF1455 at 226.380 kb on + strand, within GFF1455 at 226.381 kb on - strand, within GFF1455 at 226.389 kb on - strand, within GFF1455 at 226.458 kb on + strand, within GFF1455 at 226.458 kb on + strand, within GFF1455 at 226.458 kb on + strand, within GFF1455 at 226.458 kb on + strand, within GFF1455 at 226.459 kb on - strand, within GFF1455 at 226.459 kb on - strand, within GFF1455 at 226.459 kb on - strand, within GFF1455 at 226.459 kb on - strand, within GFF1455 at 226.459 kb on - strand, within GFF1455 at 226.473 kb on + strand, within GFF1455 at 226.473 kb on + strand, within GFF1455 at 226.473 kb on + strand, within GFF1455 at 226.967 kb on + strand, within GFF1455 at 226.968 kb on - strand, within GFF1455 at 227.185 kb on + strand at 227.194 kb on + strand at 227.195 kb on - strand at 227.195 kb on - strand at 227.195 kb on - strand at 227.389 kb on + strand, within GFF1456 at 227.389 kb on + strand, within GFF1456 at 227.390 kb on - strand, within GFF1456 at 227.390 kb on - strand, within GFF1456 at 227.526 kb on - strand, within GFF1456 at 227.880 kb on + strand, within GFF1456 at 227.880 kb on + strand, within GFF1456 at 227.881 kb on - strand, within GFF1456 at 227.881 kb on - strand, within GFF1456 at 227.881 kb on - strand, within GFF1456 at 227.881 kb on - strand, within GFF1456 at 228.278 kb on + strand at 228.279 kb on - strand at 228.715 kb on + strand, within GFF1457 at 228.715 kb on + strand, within GFF1457 at 228.715 kb on + strand, within GFF1457 at 228.957 kb on + strand, within GFF1457 at 228.958 kb on - strand, within GFF1457 at 228.968 kb on + strand, within GFF1457 at 228.968 kb on + strand, within GFF1457 at 229.015 kb on - strand, within GFF1457 at 229.045 kb on + strand at 229.045 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 226,380 + GFF1455 0.31 +0.2 226,380 + GFF1455 0.31 -0.7 226,381 - GFF1455 0.31 -0.0 226,389 - GFF1455 0.31 -0.3 226,458 + GFF1455 0.38 +1.0 226,458 + GFF1455 0.38 -0.2 226,458 + GFF1455 0.38 -1.0 226,458 + GFF1455 0.38 +0.6 226,459 - GFF1455 0.38 -0.6 226,459 - GFF1455 0.38 -0.3 226,459 - GFF1455 0.38 +0.6 226,459 - GFF1455 0.38 -0.3 226,459 - GFF1455 0.38 +1.3 226,473 + GFF1455 0.39 +0.3 226,473 + GFF1455 0.39 -0.2 226,473 + GFF1455 0.39 +0.2 226,967 + GFF1455 0.84 -0.3 226,968 - GFF1455 0.84 +0.1 227,185 + +0.4 227,194 + +1.1 227,195 - +0.1 227,195 - -0.5 227,195 - +1.0 227,389 + GFF1456 0.15 -1.3 227,389 + GFF1456 0.15 -0.4 227,390 - GFF1456 0.15 -0.6 227,390 - GFF1456 0.15 -0.0 227,526 - GFF1456 0.30 +0.1 227,880 + GFF1456 0.71 +0.6 227,880 + GFF1456 0.71 -1.0 227,881 - GFF1456 0.71 -1.8 227,881 - GFF1456 0.71 -0.6 227,881 - GFF1456 0.71 +0.2 227,881 - GFF1456 0.71 -0.9 228,278 + +0.7 228,279 - -0.8 228,715 + GFF1457 0.53 +0.5 228,715 + GFF1457 0.53 -0.0 228,715 + GFF1457 0.53 -0.1 228,957 + GFF1457 0.80 +1.0 228,958 - GFF1457 0.81 -0.2 228,968 + GFF1457 0.82 -0.4 228,968 + GFF1457 0.82 +0.2 229,015 - GFF1457 0.87 +0.1 229,045 + -0.3 229,045 + -0.3
Or see this region's nucleotide sequence