Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1442 and GFF1443 are separated by 50 nucleotides GFF1443 and GFF1444 are separated by 112 nucleotides GFF1444 and GFF1445 are separated by 163 nucleotides
GFF1442 - Trigger factor, at 208,009 to 209,319
GFF1442
GFF1443 - ATP-dependent Clp protease proteolytic subunit, at 209,370 to 210,047
GFF1443
GFF1444 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 210,160 to 211,443
GFF1444
GFF1445 - Lon protease, at 211,607 to 214,003
GFF1445
Position (kb) 210
211
212 Strain fitness (log2 ratio) -2
-1
0
1
2 at 209.167 kb on + strand, within GFF1442 at 209.167 kb on + strand, within GFF1442 at 209.167 kb on + strand, within GFF1442 at 209.170 kb on + strand, within GFF1442 at 209.170 kb on + strand, within GFF1442 at 209.171 kb on - strand, within GFF1442 at 209.171 kb on - strand, within GFF1442 at 209.171 kb on - strand, within GFF1442 at 209.250 kb on + strand at 209.250 kb on + strand at 209.251 kb on - strand at 209.275 kb on + strand at 209.297 kb on + strand at 209.333 kb on - strand at 209.347 kb on + strand at 209.347 kb on + strand at 209.347 kb on + strand at 209.347 kb on + strand at 209.347 kb on + strand at 209.348 kb on - strand at 209.348 kb on - strand at 209.369 kb on + strand at 209.370 kb on - strand at 209.370 kb on - strand at 209.376 kb on - strand at 209.376 kb on - strand at 209.386 kb on + strand at 209.386 kb on + strand at 209.386 kb on + strand at 209.386 kb on + strand at 209.386 kb on + strand at 209.386 kb on + strand at 209.386 kb on + strand at 209.386 kb on + strand at 209.386 kb on + strand at 209.387 kb on - strand at 209.387 kb on - strand at 209.387 kb on - strand at 209.390 kb on + strand at 209.390 kb on + strand at 209.390 kb on + strand at 209.390 kb on + strand at 209.390 kb on + strand at 209.390 kb on + strand at 209.390 kb on + strand at 209.391 kb on - strand at 209.427 kb on + strand at 209.428 kb on - strand at 209.429 kb on + strand at 209.429 kb on + strand at 209.430 kb on - strand at 209.512 kb on - strand, within GFF1443 at 209.520 kb on + strand, within GFF1443 at 209.521 kb on - strand, within GFF1443 at 209.521 kb on - strand, within GFF1443 at 209.521 kb on - strand, within GFF1443 at 209.574 kb on + strand, within GFF1443 at 209.574 kb on + strand, within GFF1443 at 209.575 kb on - strand, within GFF1443 at 209.575 kb on - strand, within GFF1443 at 209.575 kb on - strand, within GFF1443 at 209.575 kb on - strand, within GFF1443 at 209.575 kb on - strand, within GFF1443 at 209.575 kb on - strand, within GFF1443 at 209.575 kb on - strand, within GFF1443 at 209.646 kb on + strand, within GFF1443 at 209.646 kb on + strand, within GFF1443 at 209.647 kb on - strand, within GFF1443 at 209.647 kb on - strand, within GFF1443 at 209.722 kb on + strand, within GFF1443 at 209.723 kb on - strand, within GFF1443 at 209.939 kb on + strand, within GFF1443 at 210.045 kb on + strand at 210.045 kb on + strand at 210.046 kb on - strand at 210.048 kb on + strand at 210.048 kb on + strand at 210.048 kb on + strand at 210.048 kb on + strand at 210.048 kb on + strand at 210.048 kb on + strand at 210.048 kb on + strand at 210.049 kb on - strand at 210.049 kb on - strand at 210.049 kb on - strand at 210.050 kb on + strand at 210.050 kb on + strand at 210.050 kb on + strand at 210.050 kb on + strand at 210.050 kb on + strand at 210.050 kb on + strand at 210.050 kb on + strand at 210.051 kb on - strand at 210.051 kb on - strand at 210.051 kb on - strand at 210.051 kb on - strand at 210.051 kb on - strand at 210.051 kb on - strand at 210.051 kb on - strand at 210.051 kb on - strand at 210.051 kb on - strand at 210.051 kb on - strand at 210.051 kb on - strand at 210.051 kb on - strand at 210.114 kb on + strand at 210.114 kb on + strand at 210.115 kb on - strand at 210.203 kb on - strand at 210.203 kb on - strand at 210.203 kb on - strand at 210.349 kb on - strand, within GFF1444 at 210.349 kb on - strand, within GFF1444 at 210.391 kb on + strand, within GFF1444 at 210.439 kb on + strand, within GFF1444 at 210.440 kb on - strand, within GFF1444 at 210.448 kb on + strand, within GFF1444 at 210.623 kb on - strand, within GFF1444 at 210.623 kb on - strand, within GFF1444 at 210.623 kb on - strand, within GFF1444 at 210.709 kb on + strand, within GFF1444 at 210.710 kb on - strand, within GFF1444 at 210.710 kb on - strand, within GFF1444 at 211.257 kb on + strand, within GFF1444 at 211.258 kb on - strand, within GFF1444 at 211.315 kb on + strand at 211.315 kb on + strand at 211.316 kb on - strand at 211.316 kb on - strand at 211.316 kb on - strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.395 kb on + strand at 211.395 kb on + strand at 211.395 kb on + strand at 211.396 kb on - strand at 211.396 kb on - strand at 211.396 kb on - strand at 211.396 kb on - strand at 211.396 kb on - strand at 211.396 kb on - strand at 211.396 kb on - strand at 211.399 kb on + strand at 211.399 kb on + strand at 211.399 kb on + strand at 211.399 kb on + strand at 211.442 kb on - strand at 211.442 kb on - strand at 211.442 kb on - strand at 211.493 kb on + strand at 211.505 kb on + strand at 211.505 kb on + strand at 211.505 kb on + strand at 211.561 kb on + strand at 211.561 kb on + strand at 211.561 kb on + strand at 211.562 kb on - strand at 211.562 kb on - strand at 211.562 kb on - strand at 211.562 kb on - strand at 211.584 kb on - strand at 211.594 kb on + strand at 211.810 kb on + strand at 211.888 kb on + strand, within GFF1445 at 211.889 kb on - strand, within GFF1445 at 212.015 kb on + strand, within GFF1445 at 212.015 kb on + strand, within GFF1445 at 212.016 kb on - strand, within GFF1445 at 212.016 kb on - strand, within GFF1445 at 212.156 kb on + strand, within GFF1445 at 212.276 kb on + strand, within GFF1445 at 212.276 kb on + strand, within GFF1445 at 212.277 kb on - strand, within GFF1445 at 212.277 kb on - strand, within GFF1445 at 212.277 kb on - strand, within GFF1445 at 212.280 kb on - strand, within GFF1445 at 212.280 kb on - strand, within GFF1445 at 212.280 kb on - strand, within GFF1445 at 212.280 kb on - strand, within GFF1445
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 209,167 + GFF1442 0.88 +0.2 209,167 + GFF1442 0.88 +0.9 209,167 + GFF1442 0.88 +0.9 209,170 + GFF1442 0.89 +0.7 209,170 + GFF1442 0.89 +1.2 209,171 - GFF1442 0.89 -0.4 209,171 - GFF1442 0.89 +0.4 209,171 - GFF1442 0.89 -1.0 209,250 + -1.8 209,250 + -0.5 209,251 - -0.4 209,275 + -0.5 209,297 + -0.0 209,333 - -1.2 209,347 + -1.2 209,347 + -0.2 209,347 + +0.2 209,347 + -0.5 209,347 + -0.7 209,348 - -0.8 209,348 - -1.4 209,369 + -1.2 209,370 - -1.2 209,370 - -1.2 209,376 - -1.9 209,376 - +1.2 209,386 + +0.0 209,386 + +0.4 209,386 + +0.6 209,386 + +0.5 209,386 + +0.4 209,386 + +0.4 209,386 + -0.9 209,386 + +0.1 209,386 + -0.9 209,387 - -1.4 209,387 - +0.2 209,387 - +0.6 209,390 + -0.7 209,390 + -0.8 209,390 + -1.2 209,390 + +0.4 209,390 + -1.3 209,390 + -0.9 209,390 + +1.0 209,391 - -0.4 209,427 + -0.4 209,428 - +0.6 209,429 + +0.6 209,429 + -1.0 209,430 - -0.2 209,512 - GFF1443 0.21 -1.0 209,520 + GFF1443 0.22 -0.4 209,521 - GFF1443 0.22 -1.0 209,521 - GFF1443 0.22 -1.0 209,521 - GFF1443 0.22 -1.6 209,574 + GFF1443 0.30 +0.8 209,574 + GFF1443 0.30 -1.6 209,575 - GFF1443 0.30 -0.0 209,575 - GFF1443 0.30 +0.1 209,575 - GFF1443 0.30 -0.4 209,575 - GFF1443 0.30 +0.2 209,575 - GFF1443 0.30 +0.6 209,575 - GFF1443 0.30 -1.8 209,575 - GFF1443 0.30 -0.8 209,646 + GFF1443 0.41 -0.3 209,646 + GFF1443 0.41 -0.0 209,647 - GFF1443 0.41 +0.2 209,647 - GFF1443 0.41 -0.4 209,722 + GFF1443 0.52 -0.0 209,723 - GFF1443 0.52 -0.4 209,939 + GFF1443 0.84 -0.0 210,045 + -2.3 210,045 + -1.5 210,046 - -0.6 210,048 + -1.4 210,048 + -1.1 210,048 + +1.6 210,048 + -0.4 210,048 + -0.3 210,048 + +0.7 210,048 + -1.6 210,049 - +0.8 210,049 - -0.2 210,049 - -0.0 210,050 + -0.8 210,050 + -1.5 210,050 + -1.1 210,050 + +1.3 210,050 + -0.7 210,050 + -0.0 210,050 + -2.0 210,051 - -0.3 210,051 - -0.8 210,051 - -1.0 210,051 - -1.4 210,051 - -1.0 210,051 - -1.5 210,051 - -1.6 210,051 - -0.1 210,051 - -1.4 210,051 - +0.2 210,051 - -1.1 210,051 - +0.2 210,114 + -1.0 210,114 + -1.2 210,115 - -1.0 210,203 - -0.4 210,203 - -1.4 210,203 - -1.2 210,349 - GFF1444 0.15 -0.4 210,349 - GFF1444 0.15 +0.6 210,391 + GFF1444 0.18 -1.4 210,439 + GFF1444 0.22 -0.4 210,440 - GFF1444 0.22 -1.2 210,448 + GFF1444 0.22 -0.0 210,623 - GFF1444 0.36 -0.4 210,623 - GFF1444 0.36 -0.8 210,623 - GFF1444 0.36 -0.4 210,709 + GFF1444 0.43 -0.8 210,710 - GFF1444 0.43 -2.0 210,710 - GFF1444 0.43 -0.4 211,257 + GFF1444 0.85 -0.0 211,258 - GFF1444 0.86 -1.2 211,315 + -0.4 211,315 + -0.8 211,316 - -1.0 211,316 - -1.0 211,316 - -0.8 211,393 + -1.7 211,393 + +0.0 211,393 + -0.4 211,393 + -1.5 211,393 + +1.2 211,393 + -0.9 211,393 + -0.4 211,393 + -0.7 211,393 + -0.9 211,393 + -0.9 211,393 + +0.1 211,393 + -1.1 211,393 + +0.2 211,393 + -0.4 211,393 + -1.2 211,393 + -0.2 211,393 + +0.2 211,394 - -0.8 211,394 - -0.0 211,394 - -0.2 211,394 - +0.6 211,394 - -0.6 211,394 - -0.4 211,394 - +0.2 211,394 - -0.4 211,394 - +0.2 211,394 - -0.4 211,394 - +0.4 211,394 - -0.8 211,394 - -0.4 211,394 - +1.6 211,394 - -1.6 211,394 - +0.4 211,394 - -0.1 211,395 + -0.3 211,395 + -0.3 211,395 + -1.3 211,396 - +0.5 211,396 - -0.4 211,396 - +0.1 211,396 - -0.0 211,396 - +0.8 211,396 - -1.1 211,396 - -1.2 211,399 + -1.3 211,399 + +1.2 211,399 + -0.1 211,399 + -0.2 211,442 - -1.2 211,442 - -0.3 211,442 - +1.0 211,493 + -0.6 211,505 + +2.1 211,505 + +0.7 211,505 + +0.3 211,561 + -0.6 211,561 + +0.2 211,561 + -0.0 211,562 - -1.2 211,562 - -1.2 211,562 - +0.2 211,562 - -0.0 211,584 - -0.0 211,594 + -0.5 211,810 + -0.4 211,888 + GFF1445 0.12 +0.4 211,889 - GFF1445 0.12 -0.5 212,015 + GFF1445 0.17 -0.2 212,015 + GFF1445 0.17 +0.2 212,016 - GFF1445 0.17 +0.3 212,016 - GFF1445 0.17 +0.2 212,156 + GFF1445 0.23 -0.4 212,276 + GFF1445 0.28 +0.6 212,276 + GFF1445 0.28 -0.2 212,277 - GFF1445 0.28 -0.0 212,277 - GFF1445 0.28 -1.1 212,277 - GFF1445 0.28 +0.2 212,280 - GFF1445 0.28 -1.0 212,280 - GFF1445 0.28 -0.0 212,280 - GFF1445 0.28 -0.8 212,280 - GFF1445 0.28 +0.6
Or see this region's nucleotide sequence