Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1372 and GFF1373 are separated by 565 nucleotides GFF1373 and GFF1374 are separated by 22 nucleotides GFF1374 and GFF1375 are separated by 49 nucleotides GFF1375 and GFF1376 are separated by 147 nucleotides
GFF1372 - hypothetical protein, at 135,234 to 135,686
GFF1372
GFF1373 - hypothetical protein, at 136,252 to 136,419
GFF1373
GFF1374 - hypothetical protein, at 136,442 to 136,714
GFF1374
GFF1375 - hypothetical protein, at 136,764 to 136,991
GFF1375
GFF1376 - HTH-type transcriptional regulator NimR, at 137,139 to 137,906
GFF1376
Position (kb) 136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 135.339 kb on - strand, within GFF1372 at 135.339 kb on - strand, within GFF1372 at 135.471 kb on + strand, within GFF1372 at 135.471 kb on + strand, within GFF1372 at 135.471 kb on + strand, within GFF1372 at 135.471 kb on + strand, within GFF1372 at 135.471 kb on + strand, within GFF1372 at 135.471 kb on + strand, within GFF1372 at 135.471 kb on + strand, within GFF1372 at 135.471 kb on + strand, within GFF1372 at 135.471 kb on + strand, within GFF1372 at 135.472 kb on - strand, within GFF1372 at 135.656 kb on + strand at 135.656 kb on + strand at 135.656 kb on + strand at 135.657 kb on - strand at 135.657 kb on - strand at 135.657 kb on - strand at 135.657 kb on - strand at 135.657 kb on - strand at 135.657 kb on - strand at 135.657 kb on - strand at 135.660 kb on + strand at 135.661 kb on - strand at 135.706 kb on + strand at 135.706 kb on + strand at 135.706 kb on + strand at 135.706 kb on + strand at 135.706 kb on + strand at 135.706 kb on + strand at 135.706 kb on + strand at 135.707 kb on - strand at 135.707 kb on - strand at 135.707 kb on - strand at 135.707 kb on - strand at 135.707 kb on - strand at 135.707 kb on - strand at 135.710 kb on + strand at 135.711 kb on - strand at 135.711 kb on - strand at 135.711 kb on - strand at 135.711 kb on - strand at 135.751 kb on + strand at 135.751 kb on + strand at 136.178 kb on - strand at 136.190 kb on + strand at 136.190 kb on + strand at 136.190 kb on + strand at 136.190 kb on + strand at 136.190 kb on + strand at 136.190 kb on + strand at 136.191 kb on - strand at 136.191 kb on - strand at 136.191 kb on - strand at 136.191 kb on - strand at 136.191 kb on - strand at 136.191 kb on - strand at 136.191 kb on - strand at 136.315 kb on + strand, within GFF1373 at 136.316 kb on - strand, within GFF1373 at 136.316 kb on - strand, within GFF1373 at 136.330 kb on - strand, within GFF1373 at 136.336 kb on + strand, within GFF1373 at 136.336 kb on + strand, within GFF1373 at 136.336 kb on + strand, within GFF1373 at 136.336 kb on + strand, within GFF1373 at 136.337 kb on - strand, within GFF1373 at 136.337 kb on - strand, within GFF1373 at 136.681 kb on - strand, within GFF1374 at 136.701 kb on + strand at 136.701 kb on + strand at 136.702 kb on - strand at 136.702 kb on - strand at 136.702 kb on - strand at 136.702 kb on - strand at 136.702 kb on - strand at 136.702 kb on - strand at 136.928 kb on + strand, within GFF1375 at 136.972 kb on + strand at 136.991 kb on + strand at 137.015 kb on + strand at 137.067 kb on - strand at 137.067 kb on - strand at 137.070 kb on + strand at 137.100 kb on + strand at 137.259 kb on + strand, within GFF1376 at 137.390 kb on + strand, within GFF1376 at 137.390 kb on + strand, within GFF1376 at 137.391 kb on - strand, within GFF1376 at 137.394 kb on + strand, within GFF1376 at 137.394 kb on + strand, within GFF1376 at 137.394 kb on + strand, within GFF1376 at 137.395 kb on - strand, within GFF1376 at 137.395 kb on - strand, within GFF1376
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 135,339 - GFF1372 0.23 -0.1 135,339 - GFF1372 0.23 +0.6 135,471 + GFF1372 0.52 +0.6 135,471 + GFF1372 0.52 -0.6 135,471 + GFF1372 0.52 +0.6 135,471 + GFF1372 0.52 -0.3 135,471 + GFF1372 0.52 +0.4 135,471 + GFF1372 0.52 +0.0 135,471 + GFF1372 0.52 -0.1 135,471 + GFF1372 0.52 +1.6 135,471 + GFF1372 0.52 -0.3 135,472 - GFF1372 0.53 +0.2 135,656 + -0.9 135,656 + -2.3 135,656 + +0.4 135,657 - +1.0 135,657 - -0.4 135,657 - +0.4 135,657 - +1.6 135,657 - +0.6 135,657 - +0.3 135,657 - +1.0 135,660 + -1.1 135,661 - -0.1 135,706 + -0.2 135,706 + +0.7 135,706 + +0.3 135,706 + -0.4 135,706 + -0.2 135,706 + +0.9 135,706 + +0.6 135,707 - -0.4 135,707 - -0.8 135,707 - +0.8 135,707 - +1.4 135,707 - -0.9 135,707 - +0.5 135,710 + -0.6 135,711 - +0.0 135,711 - +0.4 135,711 - -0.2 135,711 - +1.1 135,751 + -1.2 135,751 + -0.9 136,178 - +0.5 136,190 + +0.7 136,190 + +0.5 136,190 + +1.0 136,190 + +0.5 136,190 + +0.1 136,190 + -0.5 136,191 - +0.4 136,191 - +0.0 136,191 - +0.6 136,191 - -0.1 136,191 - +0.3 136,191 - -1.2 136,191 - -0.5 136,315 + GFF1373 0.38 -0.4 136,316 - GFF1373 0.38 -0.9 136,316 - GFF1373 0.38 -0.7 136,330 - GFF1373 0.46 +1.4 136,336 + GFF1373 0.50 -0.0 136,336 + GFF1373 0.50 -2.1 136,336 + GFF1373 0.50 -0.9 136,336 + GFF1373 0.50 +0.6 136,337 - GFF1373 0.51 -3.1 136,337 - GFF1373 0.51 -2.1 136,681 - GFF1374 0.88 -1.0 136,701 + -0.3 136,701 + +1.6 136,702 - -0.6 136,702 - -0.1 136,702 - +0.0 136,702 - -0.4 136,702 - -0.2 136,702 - +1.1 136,928 + GFF1375 0.72 -0.4 136,972 + -0.4 136,991 + -0.6 137,015 + +0.4 137,067 - +1.3 137,067 - -0.9 137,070 + -0.1 137,100 + +0.5 137,259 + GFF1376 0.16 +0.0 137,390 + GFF1376 0.33 -0.5 137,390 + GFF1376 0.33 -1.4 137,391 - GFF1376 0.33 +1.2 137,394 + GFF1376 0.33 -0.7 137,394 + GFF1376 0.33 -0.5 137,394 + GFF1376 0.33 -0.8 137,395 - GFF1376 0.33 +0.5 137,395 - GFF1376 0.33 -0.7
Or see this region's nucleotide sequence