Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1337 and GFF1338 are separated by 58 nucleotides GFF1338 and GFF1339 are separated by 3 nucleotides GFF1339 and GFF1340 are separated by 32 nucleotides GFF1340 and GFF1341 are separated by 11 nucleotides
GFF1337 - Cyclohexadienyl dehydratase, at 98,381 to 99,166
GFF1337
GFF1338 - Copper resistance protein D, at 99,225 to 100,094
GFF1338
GFF1339 - Copper resistance protein C, at 100,098 to 100,472
GFF1339
GFF1340 - Copper resistance protein B, at 100,505 to 101,374
GFF1340
GFF1341 - Copper resistance protein A, at 101,386 to 103,083
GFF1341
Position (kb) 100
101 Strain fitness (log2 ratio) -2
-1
0
1 at 99.203 kb on + strand at 99.204 kb on - strand at 99.204 kb on - strand at 99.451 kb on + strand, within GFF1338 at 99.499 kb on + strand, within GFF1338 at 99.780 kb on + strand, within GFF1338 at 99.798 kb on + strand, within GFF1338 at 100.009 kb on + strand at 100.009 kb on + strand at 100.010 kb on - strand at 100.054 kb on + strand at 100.054 kb on + strand at 100.054 kb on + strand at 100.054 kb on + strand at 100.054 kb on + strand at 100.054 kb on + strand at 100.054 kb on + strand at 100.054 kb on + strand at 100.054 kb on + strand at 100.054 kb on + strand at 100.055 kb on - strand at 100.055 kb on - strand at 100.055 kb on - strand at 100.055 kb on - strand at 100.055 kb on - strand at 100.055 kb on - strand at 100.055 kb on - strand at 100.171 kb on + strand, within GFF1339 at 100.171 kb on + strand, within GFF1339 at 100.172 kb on - strand, within GFF1339 at 100.291 kb on - strand, within GFF1339 at 100.291 kb on - strand, within GFF1339 at 100.432 kb on - strand, within GFF1339 at 100.446 kb on + strand at 100.496 kb on + strand at 100.497 kb on - strand at 100.573 kb on - strand at 100.573 kb on - strand at 100.615 kb on + strand, within GFF1340 at 100.615 kb on + strand, within GFF1340 at 100.615 kb on + strand, within GFF1340 at 100.616 kb on - strand, within GFF1340 at 100.617 kb on + strand, within GFF1340 at 100.617 kb on + strand, within GFF1340 at 100.617 kb on + strand, within GFF1340 at 100.618 kb on - strand, within GFF1340 at 100.618 kb on - strand, within GFF1340 at 100.618 kb on - strand, within GFF1340 at 100.618 kb on - strand, within GFF1340 at 100.618 kb on - strand, within GFF1340 at 100.618 kb on - strand, within GFF1340 at 100.618 kb on - strand, within GFF1340 at 100.618 kb on - strand, within GFF1340 at 100.717 kb on - strand, within GFF1340 at 100.773 kb on + strand, within GFF1340 at 100.774 kb on - strand, within GFF1340 at 100.845 kb on + strand, within GFF1340 at 100.845 kb on + strand, within GFF1340 at 101.118 kb on + strand, within GFF1340 at 101.119 kb on - strand, within GFF1340 at 101.126 kb on + strand, within GFF1340 at 101.126 kb on + strand, within GFF1340 at 101.127 kb on - strand, within GFF1340 at 101.127 kb on - strand, within GFF1340 at 101.127 kb on - strand, within GFF1340 at 101.128 kb on + strand, within GFF1340 at 101.128 kb on + strand, within GFF1340 at 101.128 kb on + strand, within GFF1340 at 101.129 kb on - strand, within GFF1340 at 101.432 kb on + strand at 101.450 kb on + strand at 101.450 kb on + strand at 101.451 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 99,203 + -0.2 99,204 - -1.9 99,204 - +0.0 99,451 + GFF1338 0.26 -0.9 99,499 + GFF1338 0.31 -0.5 99,780 + GFF1338 0.64 +0.1 99,798 + GFF1338 0.66 -0.5 100,009 + +0.5 100,009 + -1.0 100,010 - -1.7 100,054 + +0.3 100,054 + -0.9 100,054 + +0.9 100,054 + +0.2 100,054 + -0.0 100,054 + -1.2 100,054 + +0.0 100,054 + -0.4 100,054 + -0.9 100,054 + +0.5 100,055 - -0.6 100,055 - +0.1 100,055 - -0.4 100,055 - -0.7 100,055 - -0.0 100,055 - +0.2 100,055 - -1.0 100,171 + GFF1339 0.19 -0.7 100,171 + GFF1339 0.19 -1.0 100,172 - GFF1339 0.20 -0.4 100,291 - GFF1339 0.51 -0.9 100,291 - GFF1339 0.51 -0.8 100,432 - GFF1339 0.89 +1.3 100,446 + -1.2 100,496 + -0.5 100,497 - -0.4 100,573 - +0.3 100,573 - -0.1 100,615 + GFF1340 0.13 -0.3 100,615 + GFF1340 0.13 +0.0 100,615 + GFF1340 0.13 +0.2 100,616 - GFF1340 0.13 +0.2 100,617 + GFF1340 0.13 -0.1 100,617 + GFF1340 0.13 -0.5 100,617 + GFF1340 0.13 +0.3 100,618 - GFF1340 0.13 -0.4 100,618 - GFF1340 0.13 -0.4 100,618 - GFF1340 0.13 -0.5 100,618 - GFF1340 0.13 -0.1 100,618 - GFF1340 0.13 -1.0 100,618 - GFF1340 0.13 -0.6 100,618 - GFF1340 0.13 +0.9 100,618 - GFF1340 0.13 +1.1 100,717 - GFF1340 0.24 -0.2 100,773 + GFF1340 0.31 +0.2 100,774 - GFF1340 0.31 -0.9 100,845 + GFF1340 0.39 -0.2 100,845 + GFF1340 0.39 +1.6 101,118 + GFF1340 0.70 -0.0 101,119 - GFF1340 0.71 -1.9 101,126 + GFF1340 0.71 +0.8 101,126 + GFF1340 0.71 -1.3 101,127 - GFF1340 0.71 -1.4 101,127 - GFF1340 0.71 +0.0 101,127 - GFF1340 0.71 +0.5 101,128 + GFF1340 0.72 -0.8 101,128 + GFF1340 0.72 -0.1 101,128 + GFF1340 0.72 -0.4 101,129 - GFF1340 0.72 -0.7 101,432 + -0.2 101,450 + -0.3 101,450 + +0.6 101,451 - +0.9
Or see this region's nucleotide sequence