Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1167 and GFF1168 are separated by 75 nucleotides GFF1168 and GFF1169 are separated by 11 nucleotides GFF1169 and GFF1170 are separated by 111 nucleotides
GFF1167 - hypothetical protein, at 506,664 to 507,605
GFF1167
GFF1168 - hypothetical protein, at 507,681 to 508,157
GFF1168
GFF1169 - hypothetical protein, at 508,169 to 508,585
GFF1169
GFF1170 - HTH-type transcriptional activator RhaS, at 508,697 to 509,638
GFF1170
Position (kb) 508
509 Strain fitness (log2 ratio) -2
-1
0
1 at 507.628 kb on + strand at 507.628 kb on + strand at 507.629 kb on - strand at 507.685 kb on + strand at 507.685 kb on + strand at 508.223 kb on + strand, within GFF1169 at 508.670 kb on + strand at 508.670 kb on + strand at 508.671 kb on - strand at 508.671 kb on - strand at 508.671 kb on - strand at 508.671 kb on - strand at 508.746 kb on + strand at 509.133 kb on + strand, within GFF1170 at 509.134 kb on - strand, within GFF1170 at 509.244 kb on + strand, within GFF1170 at 509.244 kb on + strand, within GFF1170 at 509.245 kb on - strand, within GFF1170 at 509.245 kb on - strand, within GFF1170 at 509.245 kb on - strand, within GFF1170 at 509.245 kb on - strand, within GFF1170 at 509.245 kb on - strand, within GFF1170 at 509.335 kb on - strand, within GFF1170 at 509.335 kb on - strand, within GFF1170 at 509.409 kb on + strand, within GFF1170 at 509.409 kb on + strand, within GFF1170 at 509.410 kb on - strand, within GFF1170 at 509.431 kb on - strand, within GFF1170 at 509.431 kb on - strand, within GFF1170 at 509.431 kb on - strand, within GFF1170 at 509.431 kb on - strand, within GFF1170 at 509.493 kb on + strand, within GFF1170 at 509.566 kb on - strand at 509.566 kb on - strand at 509.566 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 507,628 + -0.7 507,628 + -0.8 507,629 - +0.0 507,685 + -0.3 507,685 + -0.6 508,223 + GFF1169 0.13 -1.0 508,670 + -0.4 508,670 + +1.3 508,671 - +0.3 508,671 - -0.0 508,671 - +0.9 508,671 - +0.4 508,746 + -1.1 509,133 + GFF1170 0.46 +0.9 509,134 - GFF1170 0.46 -0.6 509,244 + GFF1170 0.58 +1.0 509,244 + GFF1170 0.58 -0.4 509,245 - GFF1170 0.58 -1.2 509,245 - GFF1170 0.58 +0.0 509,245 - GFF1170 0.58 -1.9 509,245 - GFF1170 0.58 +0.5 509,245 - GFF1170 0.58 +0.2 509,335 - GFF1170 0.68 -0.6 509,335 - GFF1170 0.68 +0.3 509,409 + GFF1170 0.76 -2.5 509,409 + GFF1170 0.76 +0.1 509,410 - GFF1170 0.76 -0.9 509,431 - GFF1170 0.78 +0.4 509,431 - GFF1170 0.78 +0.1 509,431 - GFF1170 0.78 +0.5 509,431 - GFF1170 0.78 +0.2 509,493 + GFF1170 0.85 -0.3 509,566 - -0.6 509,566 - -2.5 509,566 - -0.6
Or see this region's nucleotide sequence