Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1124 and GFF1125 are separated by 1 nucleotides GFF1125 and GFF1126 are separated by 128 nucleotides GFF1126 and GFF1127 are separated by 154 nucleotides
GFF1124 - Purine ribonucleoside efflux pump NepI, at 466,070 to 467,281
GFF1124
GFF1125 - hypothetical protein, at 467,283 to 467,441
GFF1125
GFF1126 - hypothetical protein, at 467,570 to 468,067
GFF1126
GFF1127 - 2-haloacrylate reductase, at 468,222 to 469,196
GFF1127
Position (kb) 467
468
469 Strain fitness (log2 ratio) -2
-1
0
1 at 466.586 kb on + strand, within GFF1124 at 466.587 kb on - strand, within GFF1124 at 466.587 kb on - strand, within GFF1124 at 466.805 kb on + strand, within GFF1124 at 466.806 kb on - strand, within GFF1124 at 466.806 kb on - strand, within GFF1124 at 467.011 kb on - strand, within GFF1124 at 467.011 kb on - strand, within GFF1124 at 467.064 kb on + strand, within GFF1124 at 467.065 kb on - strand, within GFF1124 at 467.164 kb on + strand at 467.164 kb on + strand at 467.164 kb on + strand at 467.356 kb on + strand, within GFF1125 at 467.356 kb on + strand, within GFF1125 at 467.356 kb on + strand, within GFF1125 at 467.356 kb on + strand, within GFF1125 at 467.357 kb on - strand, within GFF1125 at 467.357 kb on - strand, within GFF1125 at 467.357 kb on - strand, within GFF1125 at 467.357 kb on - strand, within GFF1125 at 467.514 kb on + strand at 467.535 kb on + strand at 467.541 kb on - strand at 467.619 kb on + strand at 467.816 kb on - strand, within GFF1126 at 467.816 kb on - strand, within GFF1126 at 467.816 kb on - strand, within GFF1126 at 467.849 kb on + strand, within GFF1126 at 467.882 kb on - strand, within GFF1126 at 467.969 kb on + strand, within GFF1126 at 467.970 kb on - strand, within GFF1126 at 468.038 kb on + strand at 468.038 kb on + strand at 468.109 kb on - strand at 468.109 kb on - strand at 468.109 kb on - strand at 468.109 kb on - strand at 468.346 kb on - strand, within GFF1127 at 468.477 kb on + strand, within GFF1127 at 468.502 kb on - strand, within GFF1127 at 468.607 kb on - strand, within GFF1127 at 468.827 kb on + strand, within GFF1127 at 468.856 kb on + strand, within GFF1127 at 468.856 kb on + strand, within GFF1127 at 468.856 kb on + strand, within GFF1127 at 468.856 kb on + strand, within GFF1127 at 468.856 kb on + strand, within GFF1127 at 468.856 kb on + strand, within GFF1127 at 468.856 kb on + strand, within GFF1127 at 468.857 kb on - strand, within GFF1127 at 468.857 kb on - strand, within GFF1127 at 468.857 kb on - strand, within GFF1127 at 468.857 kb on - strand, within GFF1127 at 468.857 kb on - strand, within GFF1127 at 468.857 kb on - strand, within GFF1127 at 468.857 kb on - strand, within GFF1127 at 468.858 kb on + strand, within GFF1127 at 468.858 kb on + strand, within GFF1127 at 468.858 kb on + strand, within GFF1127 at 468.859 kb on - strand, within GFF1127 at 468.859 kb on - strand, within GFF1127 at 469.044 kb on + strand, within GFF1127
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 466,586 + GFF1124 0.43 -0.7 466,587 - GFF1124 0.43 +0.3 466,587 - GFF1124 0.43 +0.1 466,805 + GFF1124 0.61 -1.6 466,806 - GFF1124 0.61 -1.1 466,806 - GFF1124 0.61 -0.4 467,011 - GFF1124 0.78 -0.4 467,011 - GFF1124 0.78 +0.4 467,064 + GFF1124 0.82 -0.9 467,065 - GFF1124 0.82 -0.4 467,164 + -0.0 467,164 + -0.6 467,164 + +0.9 467,356 + GFF1125 0.46 +0.9 467,356 + GFF1125 0.46 +0.2 467,356 + GFF1125 0.46 +0.0 467,356 + GFF1125 0.46 -0.9 467,357 - GFF1125 0.47 -0.6 467,357 - GFF1125 0.47 -0.0 467,357 - GFF1125 0.47 +0.4 467,357 - GFF1125 0.47 -0.6 467,514 + +0.4 467,535 + +1.1 467,541 - -0.3 467,619 + +1.3 467,816 - GFF1126 0.49 -0.5 467,816 - GFF1126 0.49 +0.3 467,816 - GFF1126 0.49 -1.1 467,849 + GFF1126 0.56 -0.4 467,882 - GFF1126 0.63 -0.4 467,969 + GFF1126 0.80 -0.6 467,970 - GFF1126 0.80 -0.9 468,038 + -0.3 468,038 + -2.0 468,109 - +0.3 468,109 - +0.2 468,109 - +0.7 468,109 - -0.2 468,346 - GFF1127 0.13 +0.2 468,477 + GFF1127 0.26 -0.7 468,502 - GFF1127 0.29 +0.0 468,607 - GFF1127 0.39 -0.6 468,827 + GFF1127 0.62 +0.0 468,856 + GFF1127 0.65 +0.4 468,856 + GFF1127 0.65 +0.3 468,856 + GFF1127 0.65 -1.6 468,856 + GFF1127 0.65 -1.0 468,856 + GFF1127 0.65 +0.4 468,856 + GFF1127 0.65 -0.2 468,856 + GFF1127 0.65 -0.9 468,857 - GFF1127 0.65 -0.0 468,857 - GFF1127 0.65 +0.3 468,857 - GFF1127 0.65 -1.2 468,857 - GFF1127 0.65 -0.4 468,857 - GFF1127 0.65 +0.9 468,857 - GFF1127 0.65 +0.2 468,857 - GFF1127 0.65 -1.0 468,858 + GFF1127 0.65 +0.6 468,858 + GFF1127 0.65 +0.4 468,858 + GFF1127 0.65 -1.2 468,859 - GFF1127 0.65 -0.6 468,859 - GFF1127 0.65 +1.0 469,044 + GFF1127 0.84 -0.1
Or see this region's nucleotide sequence