Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1087 and GFF1088 are separated by 178 nucleotides GFF1088 and GFF1089 overlap by 4 nucleotides GFF1089 and GFF1090 are separated by 84 nucleotides GFF1090 and GFF1091 are separated by 142 nucleotides
GFF1087 - tRNA-specific adenosine deaminase, at 429,183 to 429,692
GFF1087
GFF1088 - Carboxy-S-adenosyl-L-methionine synthase, at 429,871 to 430,605
GFF1088
GFF1089 - hypothetical protein, at 430,602 to 430,850
GFF1089
GFF1090 - hypothetical protein, at 430,935 to 431,177
GFF1090
GFF1091 - hypothetical protein, at 431,320 to 432,252
GFF1091
Position (kb) 430
431 Strain fitness (log2 ratio) -1
0
1 at 429.674 kb on + strand at 429.690 kb on + strand at 429.690 kb on + strand at 429.691 kb on - strand at 429.691 kb on - strand at 429.756 kb on + strand at 429.928 kb on + strand at 429.928 kb on + strand at 429.929 kb on - strand at 430.169 kb on + strand, within GFF1088 at 430.169 kb on + strand, within GFF1088 at 430.170 kb on - strand, within GFF1088 at 430.170 kb on - strand, within GFF1088 at 430.187 kb on + strand, within GFF1088 at 430.187 kb on + strand, within GFF1088 at 430.187 kb on + strand, within GFF1088 at 430.188 kb on - strand, within GFF1088 at 430.188 kb on - strand, within GFF1088 at 430.188 kb on - strand, within GFF1088 at 430.188 kb on - strand, within GFF1088 at 430.254 kb on - strand, within GFF1088 at 430.292 kb on + strand, within GFF1088 at 430.292 kb on + strand, within GFF1088 at 430.293 kb on - strand, within GFF1088 at 430.293 kb on - strand, within GFF1088 at 430.293 kb on - strand, within GFF1088 at 430.293 kb on - strand, within GFF1088 at 430.354 kb on + strand, within GFF1088 at 430.355 kb on - strand, within GFF1088 at 430.355 kb on - strand, within GFF1088 at 430.727 kb on + strand, within GFF1089 at 430.773 kb on - strand, within GFF1089 at 430.773 kb on - strand, within GFF1089 at 430.773 kb on - strand, within GFF1089 at 430.844 kb on + strand at 430.845 kb on - strand at 430.845 kb on - strand at 430.862 kb on + strand at 430.863 kb on - strand at 430.870 kb on + strand at 430.870 kb on + strand at 430.871 kb on - strand at 430.871 kb on - strand at 430.874 kb on + strand at 430.874 kb on + strand at 430.874 kb on + strand at 430.875 kb on - strand at 430.875 kb on - strand at 431.168 kb on - strand at 431.168 kb on - strand at 431.216 kb on - strand at 431.258 kb on + strand at 431.342 kb on - strand at 431.595 kb on + strand, within GFF1091 at 431.596 kb on - strand, within GFF1091 at 431.596 kb on - strand, within GFF1091 at 431.620 kb on + strand, within GFF1091 at 431.620 kb on + strand, within GFF1091 at 431.621 kb on - strand, within GFF1091 at 431.673 kb on - strand, within GFF1091 at 431.673 kb on - strand, within GFF1091 at 431.717 kb on - strand, within GFF1091
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 429,674 + -0.4 429,690 + -0.3 429,690 + +0.4 429,691 - -0.8 429,691 - +1.2 429,756 + +0.6 429,928 + -0.9 429,928 + -0.1 429,929 - +0.0 430,169 + GFF1088 0.41 -1.0 430,169 + GFF1088 0.41 +0.9 430,170 - GFF1088 0.41 -0.3 430,170 - GFF1088 0.41 -0.8 430,187 + GFF1088 0.43 -0.5 430,187 + GFF1088 0.43 -0.9 430,187 + GFF1088 0.43 +0.8 430,188 - GFF1088 0.43 -1.5 430,188 - GFF1088 0.43 -0.3 430,188 - GFF1088 0.43 +0.5 430,188 - GFF1088 0.43 -0.6 430,254 - GFF1088 0.52 +0.5 430,292 + GFF1088 0.57 +1.0 430,292 + GFF1088 0.57 +0.7 430,293 - GFF1088 0.57 +0.5 430,293 - GFF1088 0.57 +0.7 430,293 - GFF1088 0.57 +0.0 430,293 - GFF1088 0.57 -0.0 430,354 + GFF1088 0.66 -1.1 430,355 - GFF1088 0.66 +1.5 430,355 - GFF1088 0.66 -0.3 430,727 + GFF1089 0.50 -0.8 430,773 - GFF1089 0.69 -0.5 430,773 - GFF1089 0.69 -0.3 430,773 - GFF1089 0.69 -0.9 430,844 + -0.9 430,845 - -0.6 430,845 - -1.0 430,862 + +0.3 430,863 - +0.7 430,870 + -0.8 430,870 + +0.7 430,871 - +0.5 430,871 - -1.4 430,874 + -0.3 430,874 + +0.1 430,874 + -0.1 430,875 - +0.1 430,875 - -0.5 431,168 - +1.5 431,168 - +0.7 431,216 - -0.6 431,258 + -0.0 431,342 - +1.1 431,595 + GFF1091 0.29 -0.2 431,596 - GFF1091 0.30 +0.0 431,596 - GFF1091 0.30 -0.2 431,620 + GFF1091 0.32 -0.1 431,620 + GFF1091 0.32 -0.2 431,621 - GFF1091 0.32 +0.2 431,673 - GFF1091 0.38 +0.6 431,673 - GFF1091 0.38 +1.3 431,717 - GFF1091 0.43 +0.1
Or see this region's nucleotide sequence