Experiment: T3 MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_04111 and OHPLBJKB_04112 are separated by 276 nucleotides OHPLBJKB_04112 and OHPLBJKB_04113 are separated by 183 nucleotides OHPLBJKB_04113 and OHPLBJKB_04114 are separated by 6 nucleotides OHPLBJKB_04114 and OHPLBJKB_04115 are separated by 54 nucleotides
OHPLBJKB_04111: OHPLBJKB_04111 - Cystathionine gamma-synthase, at 4,327,534 to 4,328,694
_04111
OHPLBJKB_04112: OHPLBJKB_04112 - Met repressor, at 4,328,971 to 4,329,288
_04112
OHPLBJKB_04113: OHPLBJKB_04113 - hypothetical protein, at 4,329,472 to 4,330,080
_04113
OHPLBJKB_04114: OHPLBJKB_04114 - hypothetical protein, at 4,330,087 to 4,330,710
_04114
OHPLBJKB_04115: OHPLBJKB_04115 - 50S ribosomal protein L31, at 4,330,765 to 4,330,977
_04115
Position (kb) 4329
4330
4331 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4328.559 kb on - strand, within OHPLBJKB_04111 at 4328.559 kb on - strand, within OHPLBJKB_04111 at 4328.595 kb on + strand at 4328.596 kb on - strand at 4328.596 kb on - strand at 4328.597 kb on + strand at 4328.597 kb on + strand at 4328.598 kb on - strand at 4328.598 kb on - strand at 4328.598 kb on - strand at 4328.598 kb on - strand at 4328.598 kb on - strand at 4328.637 kb on - strand at 4328.637 kb on - strand at 4328.653 kb on + strand at 4328.685 kb on + strand at 4328.830 kb on + strand at 4328.830 kb on + strand at 4328.832 kb on + strand at 4328.832 kb on + strand at 4328.833 kb on - strand at 4328.833 kb on - strand at 4328.833 kb on - strand at 4328.839 kb on + strand at 4328.859 kb on + strand at 4328.859 kb on + strand at 4328.859 kb on + strand at 4328.859 kb on + strand at 4328.859 kb on + strand at 4328.860 kb on - strand at 4328.860 kb on - strand at 4328.860 kb on - strand at 4328.893 kb on + strand at 4328.893 kb on + strand at 4328.894 kb on - strand at 4328.894 kb on - strand at 4328.894 kb on - strand at 4328.894 kb on - strand at 4328.961 kb on + strand at 4328.961 kb on + strand at 4328.961 kb on + strand at 4328.961 kb on + strand at 4328.961 kb on + strand at 4328.961 kb on + strand at 4328.961 kb on + strand at 4328.961 kb on + strand at 4328.961 kb on + strand at 4328.961 kb on + strand at 4328.962 kb on - strand at 4328.962 kb on - strand at 4328.962 kb on - strand at 4328.962 kb on - strand at 4328.962 kb on - strand at 4328.962 kb on - strand at 4328.962 kb on - strand at 4328.962 kb on - strand at 4328.962 kb on - strand at 4328.962 kb on - strand at 4328.962 kb on - strand at 4328.962 kb on - strand at 4328.962 kb on - strand at 4328.965 kb on + strand at 4328.965 kb on + strand at 4328.965 kb on + strand at 4328.965 kb on + strand at 4328.966 kb on - strand at 4328.992 kb on + strand at 4328.992 kb on + strand at 4328.992 kb on + strand at 4328.993 kb on - strand at 4328.994 kb on + strand at 4328.994 kb on + strand at 4328.994 kb on + strand at 4328.994 kb on + strand at 4328.994 kb on + strand at 4328.994 kb on + strand at 4328.995 kb on - strand at 4329.064 kb on - strand, within OHPLBJKB_04112 at 4329.064 kb on - strand, within OHPLBJKB_04112 at 4329.283 kb on + strand at 4329.286 kb on + strand at 4329.287 kb on - strand at 4329.329 kb on + strand at 4329.344 kb on + strand at 4329.352 kb on - strand at 4329.454 kb on - strand at 4329.455 kb on + strand at 4329.455 kb on + strand at 4329.455 kb on + strand at 4329.455 kb on + strand at 4329.455 kb on + strand at 4329.455 kb on + strand at 4329.456 kb on - strand at 4329.456 kb on - strand at 4329.456 kb on - strand at 4329.467 kb on + strand at 4329.467 kb on + strand at 4329.468 kb on - strand at 4329.468 kb on - strand at 4329.468 kb on - strand at 4329.468 kb on - strand at 4329.468 kb on - strand at 4329.468 kb on - strand at 4329.468 kb on - strand at 4329.472 kb on - strand at 4329.513 kb on - strand at 4329.579 kb on + strand, within OHPLBJKB_04113 at 4329.579 kb on + strand, within OHPLBJKB_04113 at 4329.613 kb on - strand, within OHPLBJKB_04113 at 4329.613 kb on - strand, within OHPLBJKB_04113 at 4329.624 kb on + strand, within OHPLBJKB_04113 at 4329.682 kb on + strand, within OHPLBJKB_04113 at 4329.682 kb on + strand, within OHPLBJKB_04113 at 4329.683 kb on - strand, within OHPLBJKB_04113 at 4329.683 kb on - strand, within OHPLBJKB_04113 at 4329.683 kb on - strand, within OHPLBJKB_04113 at 4329.727 kb on + strand, within OHPLBJKB_04113 at 4329.727 kb on + strand, within OHPLBJKB_04113 at 4329.727 kb on + strand, within OHPLBJKB_04113 at 4329.727 kb on + strand, within OHPLBJKB_04113 at 4329.727 kb on + strand, within OHPLBJKB_04113 at 4329.728 kb on - strand, within OHPLBJKB_04113 at 4329.728 kb on - strand, within OHPLBJKB_04113 at 4329.728 kb on - strand, within OHPLBJKB_04113 at 4329.728 kb on - strand, within OHPLBJKB_04113 at 4329.728 kb on - strand, within OHPLBJKB_04113 at 4329.728 kb on - strand, within OHPLBJKB_04113 at 4329.728 kb on - strand, within OHPLBJKB_04113 at 4329.728 kb on - strand, within OHPLBJKB_04113 at 4329.728 kb on - strand, within OHPLBJKB_04113 at 4329.807 kb on + strand, within OHPLBJKB_04113 at 4329.850 kb on + strand, within OHPLBJKB_04113 at 4329.850 kb on + strand, within OHPLBJKB_04113 at 4329.851 kb on - strand, within OHPLBJKB_04113 at 4329.851 kb on - strand, within OHPLBJKB_04113 at 4329.957 kb on + strand, within OHPLBJKB_04113 at 4329.958 kb on - strand, within OHPLBJKB_04113 at 4329.984 kb on + strand, within OHPLBJKB_04113 at 4329.985 kb on - strand, within OHPLBJKB_04113 at 4330.004 kb on + strand, within OHPLBJKB_04113 at 4330.004 kb on + strand, within OHPLBJKB_04113 at 4330.005 kb on - strand, within OHPLBJKB_04113 at 4330.005 kb on - strand, within OHPLBJKB_04113 at 4330.005 kb on - strand, within OHPLBJKB_04113 at 4330.079 kb on - strand at 4330.128 kb on + strand at 4330.129 kb on - strand at 4330.188 kb on + strand, within OHPLBJKB_04114 at 4330.188 kb on + strand, within OHPLBJKB_04114 at 4330.189 kb on - strand, within OHPLBJKB_04114 at 4330.189 kb on - strand, within OHPLBJKB_04114 at 4330.189 kb on - strand, within OHPLBJKB_04114 at 4330.191 kb on + strand, within OHPLBJKB_04114 at 4330.191 kb on + strand, within OHPLBJKB_04114 at 4330.191 kb on + strand, within OHPLBJKB_04114 at 4330.192 kb on - strand, within OHPLBJKB_04114 at 4330.192 kb on - strand, within OHPLBJKB_04114 at 4330.192 kb on - strand, within OHPLBJKB_04114 at 4330.195 kb on + strand, within OHPLBJKB_04114 at 4330.195 kb on + strand, within OHPLBJKB_04114 at 4330.195 kb on + strand, within OHPLBJKB_04114 at 4330.195 kb on + strand, within OHPLBJKB_04114 at 4330.195 kb on + strand, within OHPLBJKB_04114 at 4330.195 kb on + strand, within OHPLBJKB_04114 at 4330.196 kb on - strand, within OHPLBJKB_04114 at 4330.198 kb on - strand, within OHPLBJKB_04114 at 4330.298 kb on - strand, within OHPLBJKB_04114 at 4330.327 kb on + strand, within OHPLBJKB_04114 at 4330.344 kb on + strand, within OHPLBJKB_04114 at 4330.391 kb on + strand, within OHPLBJKB_04114 at 4330.391 kb on + strand, within OHPLBJKB_04114 at 4330.392 kb on - strand, within OHPLBJKB_04114 at 4330.430 kb on - strand, within OHPLBJKB_04114 at 4330.430 kb on - strand, within OHPLBJKB_04114 at 4330.450 kb on - strand, within OHPLBJKB_04114 at 4330.464 kb on + strand, within OHPLBJKB_04114 at 4330.465 kb on - strand, within OHPLBJKB_04114 at 4330.465 kb on - strand, within OHPLBJKB_04114 at 4330.487 kb on + strand, within OHPLBJKB_04114 at 4330.487 kb on + strand, within OHPLBJKB_04114 at 4330.487 kb on + strand, within OHPLBJKB_04114 at 4330.488 kb on - strand, within OHPLBJKB_04114 at 4330.488 kb on - strand, within OHPLBJKB_04114 at 4330.493 kb on + strand, within OHPLBJKB_04114 at 4330.493 kb on + strand, within OHPLBJKB_04114 at 4330.497 kb on + strand, within OHPLBJKB_04114 at 4330.497 kb on + strand, within OHPLBJKB_04114 at 4330.498 kb on - strand, within OHPLBJKB_04114 at 4330.558 kb on + strand, within OHPLBJKB_04114 at 4330.558 kb on + strand, within OHPLBJKB_04114 at 4330.558 kb on + strand, within OHPLBJKB_04114 at 4330.559 kb on - strand, within OHPLBJKB_04114 at 4330.559 kb on - strand, within OHPLBJKB_04114 at 4330.559 kb on - strand, within OHPLBJKB_04114 at 4330.577 kb on - strand, within OHPLBJKB_04114 at 4330.608 kb on + strand, within OHPLBJKB_04114 at 4330.608 kb on + strand, within OHPLBJKB_04114 at 4330.609 kb on - strand, within OHPLBJKB_04114 at 4330.615 kb on - strand, within OHPLBJKB_04114 at 4330.617 kb on + strand, within OHPLBJKB_04114 at 4330.618 kb on - strand, within OHPLBJKB_04114 at 4330.618 kb on - strand, within OHPLBJKB_04114 at 4330.695 kb on - strand at 4331.048 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction T3 MOI1 remove 4,328,559 - OHPLBJKB_04111 0.88 +0.0 4,328,559 - OHPLBJKB_04111 0.88 +0.9 4,328,595 + +0.2 4,328,596 - -0.1 4,328,596 - +0.7 4,328,597 + +0.0 4,328,597 + +0.0 4,328,598 - -0.6 4,328,598 - -0.2 4,328,598 - -0.4 4,328,598 - -0.2 4,328,598 - +0.5 4,328,637 - -0.4 4,328,637 - -1.1 4,328,653 + -0.5 4,328,685 + -3.3 4,328,830 + +1.2 4,328,830 + -0.1 4,328,832 + -0.1 4,328,832 + +0.1 4,328,833 - -0.5 4,328,833 - -0.4 4,328,833 - -0.9 4,328,839 + +0.8 4,328,859 + +0.0 4,328,859 + -0.2 4,328,859 + +0.4 4,328,859 + -0.6 4,328,859 + +1.0 4,328,860 - -0.4 4,328,860 - -0.1 4,328,860 - -0.3 4,328,893 + -1.8 4,328,893 + +0.7 4,328,894 - -0.3 4,328,894 - -0.4 4,328,894 - -1.0 4,328,894 - -2.0 4,328,961 + -0.7 4,328,961 + -0.5 4,328,961 + -1.0 4,328,961 + -0.7 4,328,961 + -1.3 4,328,961 + -1.0 4,328,961 + +0.0 4,328,961 + -1.3 4,328,961 + +0.2 4,328,961 + -1.7 4,328,962 - -0.5 4,328,962 - -0.2 4,328,962 - -0.4 4,328,962 - -0.8 4,328,962 - -0.5 4,328,962 - -0.9 4,328,962 - -0.5 4,328,962 - -1.0 4,328,962 - -1.0 4,328,962 - +0.6 4,328,962 - +0.0 4,328,962 - +0.2 4,328,962 - -1.5 4,328,965 + +1.5 4,328,965 + +0.2 4,328,965 + -0.4 4,328,965 + -0.5 4,328,966 - -0.3 4,328,992 + -0.3 4,328,992 + +0.5 4,328,992 + +0.0 4,328,993 - +1.5 4,328,994 + +0.1 4,328,994 + -0.9 4,328,994 + -0.6 4,328,994 + -0.1 4,328,994 + -2.7 4,328,994 + +0.0 4,328,995 - +0.8 4,329,064 - OHPLBJKB_04112 0.29 -2.0 4,329,064 - OHPLBJKB_04112 0.29 +0.0 4,329,283 + +0.7 4,329,286 + -0.1 4,329,287 - +0.8 4,329,329 + -0.5 4,329,344 + +1.0 4,329,352 - +0.5 4,329,454 - +1.0 4,329,455 + +0.4 4,329,455 + +1.1 4,329,455 + +0.2 4,329,455 + +0.8 4,329,455 + -0.3 4,329,455 + -0.1 4,329,456 - +0.1 4,329,456 - -0.5 4,329,456 - +0.3 4,329,467 + -0.8 4,329,467 + +0.0 4,329,468 - +0.1 4,329,468 - -0.2 4,329,468 - -0.4 4,329,468 - -0.6 4,329,468 - +0.4 4,329,468 - +0.7 4,329,468 - -0.2 4,329,472 - -0.6 4,329,513 - -0.5 4,329,579 + OHPLBJKB_04113 0.18 -0.6 4,329,579 + OHPLBJKB_04113 0.18 -0.3 4,329,613 - OHPLBJKB_04113 0.23 +0.1 4,329,613 - OHPLBJKB_04113 0.23 -0.9 4,329,624 + OHPLBJKB_04113 0.25 -0.7 4,329,682 + OHPLBJKB_04113 0.34 -0.9 4,329,682 + OHPLBJKB_04113 0.34 +0.7 4,329,683 - OHPLBJKB_04113 0.35 -0.6 4,329,683 - OHPLBJKB_04113 0.35 +0.1 4,329,683 - OHPLBJKB_04113 0.35 +1.3 4,329,727 + OHPLBJKB_04113 0.42 +0.2 4,329,727 + OHPLBJKB_04113 0.42 +0.5 4,329,727 + OHPLBJKB_04113 0.42 +1.1 4,329,727 + OHPLBJKB_04113 0.42 +0.1 4,329,727 + OHPLBJKB_04113 0.42 -1.0 4,329,728 - OHPLBJKB_04113 0.42 -1.0 4,329,728 - OHPLBJKB_04113 0.42 +0.9 4,329,728 - OHPLBJKB_04113 0.42 -0.9 4,329,728 - OHPLBJKB_04113 0.42 -0.7 4,329,728 - OHPLBJKB_04113 0.42 -1.8 4,329,728 - OHPLBJKB_04113 0.42 -1.7 4,329,728 - OHPLBJKB_04113 0.42 -0.2 4,329,728 - OHPLBJKB_04113 0.42 +0.0 4,329,728 - OHPLBJKB_04113 0.42 -2.0 4,329,807 + OHPLBJKB_04113 0.55 +0.2 4,329,850 + OHPLBJKB_04113 0.62 +0.3 4,329,850 + OHPLBJKB_04113 0.62 +1.7 4,329,851 - OHPLBJKB_04113 0.62 +0.4 4,329,851 - OHPLBJKB_04113 0.62 -1.1 4,329,957 + OHPLBJKB_04113 0.80 -0.2 4,329,958 - OHPLBJKB_04113 0.80 +1.0 4,329,984 + OHPLBJKB_04113 0.84 +0.2 4,329,985 - OHPLBJKB_04113 0.84 +0.3 4,330,004 + OHPLBJKB_04113 0.87 +0.7 4,330,004 + OHPLBJKB_04113 0.87 -0.8 4,330,005 - OHPLBJKB_04113 0.88 -0.0 4,330,005 - OHPLBJKB_04113 0.88 +0.1 4,330,005 - OHPLBJKB_04113 0.88 -0.2 4,330,079 - +0.2 4,330,128 + +0.1 4,330,129 - -0.4 4,330,188 + OHPLBJKB_04114 0.16 +0.5 4,330,188 + OHPLBJKB_04114 0.16 +0.3 4,330,189 - OHPLBJKB_04114 0.16 +1.7 4,330,189 - OHPLBJKB_04114 0.16 +0.7 4,330,189 - OHPLBJKB_04114 0.16 +0.3 4,330,191 + OHPLBJKB_04114 0.17 -1.3 4,330,191 + OHPLBJKB_04114 0.17 -0.1 4,330,191 + OHPLBJKB_04114 0.17 +0.1 4,330,192 - OHPLBJKB_04114 0.17 -0.5 4,330,192 - OHPLBJKB_04114 0.17 +0.1 4,330,192 - OHPLBJKB_04114 0.17 -0.2 4,330,195 + OHPLBJKB_04114 0.17 -0.0 4,330,195 + OHPLBJKB_04114 0.17 +1.3 4,330,195 + OHPLBJKB_04114 0.17 +0.1 4,330,195 + OHPLBJKB_04114 0.17 -0.8 4,330,195 + OHPLBJKB_04114 0.17 -1.0 4,330,195 + OHPLBJKB_04114 0.17 -0.4 4,330,196 - OHPLBJKB_04114 0.17 -0.3 4,330,198 - OHPLBJKB_04114 0.18 -0.3 4,330,298 - OHPLBJKB_04114 0.34 +0.2 4,330,327 + OHPLBJKB_04114 0.38 +0.3 4,330,344 + OHPLBJKB_04114 0.41 -0.7 4,330,391 + OHPLBJKB_04114 0.49 +1.0 4,330,391 + OHPLBJKB_04114 0.49 -0.2 4,330,392 - OHPLBJKB_04114 0.49 +1.6 4,330,430 - OHPLBJKB_04114 0.55 -1.1 4,330,430 - OHPLBJKB_04114 0.55 +0.6 4,330,450 - OHPLBJKB_04114 0.58 -0.2 4,330,464 + OHPLBJKB_04114 0.60 -0.2 4,330,465 - OHPLBJKB_04114 0.61 -0.1 4,330,465 - OHPLBJKB_04114 0.61 -0.0 4,330,487 + OHPLBJKB_04114 0.64 -0.2 4,330,487 + OHPLBJKB_04114 0.64 -0.1 4,330,487 + OHPLBJKB_04114 0.64 -1.3 4,330,488 - OHPLBJKB_04114 0.64 +0.4 4,330,488 - OHPLBJKB_04114 0.64 -0.4 4,330,493 + OHPLBJKB_04114 0.65 +0.5 4,330,493 + OHPLBJKB_04114 0.65 -0.4 4,330,497 + OHPLBJKB_04114 0.66 -0.6 4,330,497 + OHPLBJKB_04114 0.66 -0.4 4,330,498 - OHPLBJKB_04114 0.66 +0.1 4,330,558 + OHPLBJKB_04114 0.75 -0.3 4,330,558 + OHPLBJKB_04114 0.75 +0.1 4,330,558 + OHPLBJKB_04114 0.75 -0.4 4,330,559 - OHPLBJKB_04114 0.76 +0.3 4,330,559 - OHPLBJKB_04114 0.76 +0.4 4,330,559 - OHPLBJKB_04114 0.76 +0.5 4,330,577 - OHPLBJKB_04114 0.79 +0.4 4,330,608 + OHPLBJKB_04114 0.83 +0.0 4,330,608 + OHPLBJKB_04114 0.83 -0.9 4,330,609 - OHPLBJKB_04114 0.84 -0.3 4,330,615 - OHPLBJKB_04114 0.85 -0.9 4,330,617 + OHPLBJKB_04114 0.85 -1.4 4,330,618 - OHPLBJKB_04114 0.85 -0.4 4,330,618 - OHPLBJKB_04114 0.85 -0.1 4,330,695 - +0.3 4,331,048 - +0.2
Or see this region's nucleotide sequence