Experiment: T3 MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00654 and OHPLBJKB_00655 are separated by 26 nucleotides OHPLBJKB_00655 and OHPLBJKB_00656 are separated by 268 nucleotides OHPLBJKB_00656 and OHPLBJKB_00657 are separated by 42 nucleotides
OHPLBJKB_00654: OHPLBJKB_00654 - Inner membrane protein YqiK, at 673,592 to 674,539
_00654
OHPLBJKB_00655: OHPLBJKB_00655 - Inner membrane protein YqiJ, at 674,566 to 675,195
_00655
OHPLBJKB_00656: OHPLBJKB_00656 - Surface composition regulator, at 675,464 to 675,664
_00656
OHPLBJKB_00657: OHPLBJKB_00657 - hypothetical protein, at 675,707 to 676,771
_00657
Position (kb) 674
675
676 Strain fitness (log2 ratio) -2
-1
0
1
2 at 673.594 kb on - strand at 673.638 kb on + strand at 673.729 kb on + strand, within OHPLBJKB_00654 at 673.729 kb on + strand, within OHPLBJKB_00654 at 673.729 kb on + strand, within OHPLBJKB_00654 at 673.729 kb on + strand, within OHPLBJKB_00654 at 673.729 kb on + strand, within OHPLBJKB_00654 at 673.729 kb on + strand, within OHPLBJKB_00654 at 673.730 kb on - strand, within OHPLBJKB_00654 at 673.730 kb on - strand, within OHPLBJKB_00654 at 673.730 kb on - strand, within OHPLBJKB_00654 at 673.730 kb on - strand, within OHPLBJKB_00654 at 673.786 kb on + strand, within OHPLBJKB_00654 at 673.787 kb on - strand, within OHPLBJKB_00654 at 673.859 kb on + strand, within OHPLBJKB_00654 at 673.860 kb on - strand, within OHPLBJKB_00654 at 673.860 kb on - strand, within OHPLBJKB_00654 at 673.923 kb on - strand, within OHPLBJKB_00654 at 673.979 kb on - strand, within OHPLBJKB_00654 at 673.988 kb on - strand, within OHPLBJKB_00654 at 674.041 kb on + strand, within OHPLBJKB_00654 at 674.081 kb on + strand, within OHPLBJKB_00654 at 674.134 kb on + strand, within OHPLBJKB_00654 at 674.135 kb on - strand, within OHPLBJKB_00654 at 674.149 kb on + strand, within OHPLBJKB_00654 at 674.149 kb on + strand, within OHPLBJKB_00654 at 674.149 kb on + strand, within OHPLBJKB_00654 at 674.150 kb on - strand, within OHPLBJKB_00654 at 674.150 kb on - strand, within OHPLBJKB_00654 at 674.150 kb on - strand, within OHPLBJKB_00654 at 674.150 kb on - strand, within OHPLBJKB_00654 at 674.150 kb on - strand, within OHPLBJKB_00654 at 674.150 kb on - strand, within OHPLBJKB_00654 at 674.150 kb on - strand, within OHPLBJKB_00654 at 674.153 kb on + strand, within OHPLBJKB_00654 at 674.153 kb on + strand, within OHPLBJKB_00654 at 674.153 kb on + strand, within OHPLBJKB_00654 at 674.154 kb on - strand, within OHPLBJKB_00654 at 674.154 kb on - strand, within OHPLBJKB_00654 at 674.154 kb on - strand, within OHPLBJKB_00654 at 674.154 kb on - strand, within OHPLBJKB_00654 at 674.213 kb on + strand, within OHPLBJKB_00654 at 674.213 kb on + strand, within OHPLBJKB_00654 at 674.214 kb on - strand, within OHPLBJKB_00654 at 674.321 kb on - strand, within OHPLBJKB_00654 at 674.340 kb on - strand, within OHPLBJKB_00654 at 674.563 kb on - strand at 674.692 kb on + strand, within OHPLBJKB_00655 at 674.693 kb on - strand, within OHPLBJKB_00655 at 674.734 kb on - strand, within OHPLBJKB_00655 at 674.778 kb on + strand, within OHPLBJKB_00655 at 674.779 kb on - strand, within OHPLBJKB_00655 at 674.779 kb on - strand, within OHPLBJKB_00655 at 674.794 kb on - strand, within OHPLBJKB_00655 at 674.806 kb on - strand, within OHPLBJKB_00655 at 674.846 kb on + strand, within OHPLBJKB_00655 at 674.846 kb on + strand, within OHPLBJKB_00655 at 674.847 kb on - strand, within OHPLBJKB_00655 at 674.847 kb on - strand, within OHPLBJKB_00655 at 675.017 kb on + strand, within OHPLBJKB_00655 at 675.018 kb on - strand, within OHPLBJKB_00655 at 675.018 kb on - strand, within OHPLBJKB_00655 at 675.036 kb on + strand, within OHPLBJKB_00655 at 675.059 kb on + strand, within OHPLBJKB_00655 at 675.108 kb on + strand, within OHPLBJKB_00655 at 675.108 kb on + strand, within OHPLBJKB_00655 at 675.142 kb on + strand at 675.142 kb on + strand at 675.153 kb on + strand at 675.165 kb on - strand at 675.174 kb on + strand at 675.175 kb on - strand at 675.176 kb on + strand at 675.177 kb on - strand at 675.177 kb on - strand at 675.187 kb on + strand at 675.195 kb on + strand at 675.196 kb on - strand at 675.196 kb on - strand at 675.196 kb on - strand at 675.196 kb on - strand at 675.197 kb on + strand at 675.197 kb on + strand at 675.198 kb on - strand at 675.198 kb on - strand at 675.198 kb on - strand at 675.198 kb on - strand at 675.316 kb on + strand at 675.358 kb on + strand at 675.359 kb on - strand at 675.359 kb on - strand at 675.359 kb on - strand at 675.360 kb on + strand at 675.360 kb on + strand at 675.360 kb on + strand at 675.361 kb on - strand at 675.373 kb on + strand at 675.373 kb on + strand at 675.374 kb on - strand at 675.388 kb on + strand at 675.491 kb on - strand, within OHPLBJKB_00656 at 675.586 kb on + strand, within OHPLBJKB_00656 at 675.586 kb on + strand, within OHPLBJKB_00656 at 675.586 kb on + strand, within OHPLBJKB_00656 at 675.586 kb on + strand, within OHPLBJKB_00656 at 675.586 kb on + strand, within OHPLBJKB_00656 at 675.587 kb on - strand, within OHPLBJKB_00656 at 675.587 kb on - strand, within OHPLBJKB_00656 at 675.587 kb on - strand, within OHPLBJKB_00656 at 675.587 kb on - strand, within OHPLBJKB_00656 at 675.617 kb on + strand, within OHPLBJKB_00656 at 675.654 kb on + strand at 675.654 kb on + strand at 675.665 kb on + strand at 675.665 kb on + strand at 675.665 kb on + strand at 675.665 kb on + strand at 675.666 kb on - strand at 675.666 kb on - strand at 675.668 kb on - strand at 675.668 kb on - strand at 675.701 kb on + strand at 675.705 kb on + strand at 675.706 kb on - strand at 675.708 kb on + strand at 675.708 kb on + strand at 675.708 kb on + strand at 675.708 kb on + strand at 675.708 kb on + strand at 675.708 kb on + strand at 675.708 kb on + strand at 675.708 kb on + strand at 675.709 kb on - strand at 675.709 kb on - strand at 675.709 kb on - strand at 675.709 kb on - strand at 675.709 kb on - strand at 675.709 kb on - strand at 675.709 kb on - strand at 675.709 kb on - strand at 675.712 kb on + strand at 675.712 kb on + strand at 675.712 kb on + strand at 675.713 kb on - strand at 675.714 kb on + strand at 675.714 kb on + strand at 675.715 kb on - strand at 675.731 kb on + strand at 675.731 kb on + strand at 675.732 kb on - strand at 675.732 kb on - strand at 675.743 kb on - strand at 675.907 kb on + strand, within OHPLBJKB_00657 at 675.907 kb on + strand, within OHPLBJKB_00657 at 675.911 kb on + strand, within OHPLBJKB_00657 at 675.925 kb on + strand, within OHPLBJKB_00657 at 675.927 kb on + strand, within OHPLBJKB_00657
Per-strain Table
Position Strand Gene LocusTag Fraction T3 MOI1 remove 673,594 - -1.0 673,638 + +0.4 673,729 + OHPLBJKB_00654 0.14 -2.6 673,729 + OHPLBJKB_00654 0.14 -0.6 673,729 + OHPLBJKB_00654 0.14 -0.2 673,729 + OHPLBJKB_00654 0.14 +0.2 673,729 + OHPLBJKB_00654 0.14 -0.3 673,729 + OHPLBJKB_00654 0.14 +0.2 673,730 - OHPLBJKB_00654 0.15 +1.2 673,730 - OHPLBJKB_00654 0.15 -0.1 673,730 - OHPLBJKB_00654 0.15 +0.3 673,730 - OHPLBJKB_00654 0.15 -0.2 673,786 + OHPLBJKB_00654 0.20 +0.1 673,787 - OHPLBJKB_00654 0.21 -1.2 673,859 + OHPLBJKB_00654 0.28 -0.3 673,860 - OHPLBJKB_00654 0.28 +2.6 673,860 - OHPLBJKB_00654 0.28 -1.7 673,923 - OHPLBJKB_00654 0.35 +0.5 673,979 - OHPLBJKB_00654 0.41 -0.1 673,988 - OHPLBJKB_00654 0.42 -0.1 674,041 + OHPLBJKB_00654 0.47 -1.2 674,081 + OHPLBJKB_00654 0.52 +0.5 674,134 + OHPLBJKB_00654 0.57 -1.5 674,135 - OHPLBJKB_00654 0.57 +0.4 674,149 + OHPLBJKB_00654 0.59 +0.1 674,149 + OHPLBJKB_00654 0.59 +0.3 674,149 + OHPLBJKB_00654 0.59 -1.5 674,150 - OHPLBJKB_00654 0.59 +0.9 674,150 - OHPLBJKB_00654 0.59 -0.5 674,150 - OHPLBJKB_00654 0.59 -0.1 674,150 - OHPLBJKB_00654 0.59 +0.3 674,150 - OHPLBJKB_00654 0.59 -0.6 674,150 - OHPLBJKB_00654 0.59 +0.9 674,150 - OHPLBJKB_00654 0.59 +0.3 674,153 + OHPLBJKB_00654 0.59 -0.4 674,153 + OHPLBJKB_00654 0.59 +0.2 674,153 + OHPLBJKB_00654 0.59 -0.2 674,154 - OHPLBJKB_00654 0.59 +0.3 674,154 - OHPLBJKB_00654 0.59 -0.3 674,154 - OHPLBJKB_00654 0.59 -0.2 674,154 - OHPLBJKB_00654 0.59 +1.1 674,213 + OHPLBJKB_00654 0.66 -0.1 674,213 + OHPLBJKB_00654 0.66 +0.3 674,214 - OHPLBJKB_00654 0.66 -0.4 674,321 - OHPLBJKB_00654 0.77 -0.2 674,340 - OHPLBJKB_00654 0.79 +0.3 674,563 - +0.5 674,692 + OHPLBJKB_00655 0.20 +1.7 674,693 - OHPLBJKB_00655 0.20 +0.8 674,734 - OHPLBJKB_00655 0.27 +1.4 674,778 + OHPLBJKB_00655 0.34 +0.7 674,779 - OHPLBJKB_00655 0.34 +0.5 674,779 - OHPLBJKB_00655 0.34 +0.6 674,794 - OHPLBJKB_00655 0.36 -0.1 674,806 - OHPLBJKB_00655 0.38 -0.2 674,846 + OHPLBJKB_00655 0.44 -0.2 674,846 + OHPLBJKB_00655 0.44 -0.5 674,847 - OHPLBJKB_00655 0.45 -0.1 674,847 - OHPLBJKB_00655 0.45 -0.2 675,017 + OHPLBJKB_00655 0.72 -0.2 675,018 - OHPLBJKB_00655 0.72 -0.9 675,018 - OHPLBJKB_00655 0.72 +1.1 675,036 + OHPLBJKB_00655 0.75 +0.3 675,059 + OHPLBJKB_00655 0.78 +0.3 675,108 + OHPLBJKB_00655 0.86 -0.2 675,108 + OHPLBJKB_00655 0.86 +0.6 675,142 + -1.3 675,142 + +0.5 675,153 + -0.6 675,165 - -0.4 675,174 + +0.8 675,175 - +0.3 675,176 + +0.3 675,177 - +1.1 675,177 - +0.6 675,187 + -1.0 675,195 + -0.7 675,196 - -1.7 675,196 - -0.5 675,196 - -0.0 675,196 - -0.6 675,197 + -0.4 675,197 + +1.0 675,198 - +1.0 675,198 - +0.3 675,198 - +0.2 675,198 - +0.0 675,316 + +1.0 675,358 + +1.0 675,359 - -0.6 675,359 - -1.1 675,359 - -1.1 675,360 + +0.4 675,360 + -0.5 675,360 + +0.1 675,361 - -1.1 675,373 + -1.0 675,373 + +1.0 675,374 - +0.3 675,388 + +1.0 675,491 - OHPLBJKB_00656 0.13 -0.4 675,586 + OHPLBJKB_00656 0.61 -0.6 675,586 + OHPLBJKB_00656 0.61 +0.4 675,586 + OHPLBJKB_00656 0.61 -0.4 675,586 + OHPLBJKB_00656 0.61 -0.6 675,586 + OHPLBJKB_00656 0.61 -1.1 675,587 - OHPLBJKB_00656 0.61 -0.4 675,587 - OHPLBJKB_00656 0.61 +0.3 675,587 - OHPLBJKB_00656 0.61 -2.1 675,587 - OHPLBJKB_00656 0.61 +0.7 675,617 + OHPLBJKB_00656 0.76 -0.4 675,654 + -0.1 675,654 + -0.8 675,665 + -0.0 675,665 + -0.2 675,665 + -0.9 675,665 + +0.3 675,666 - +0.7 675,666 - -1.0 675,668 - +0.5 675,668 - +0.4 675,701 + +0.4 675,705 + +0.2 675,706 - -0.3 675,708 + -1.0 675,708 + +1.1 675,708 + +0.2 675,708 + -2.2 675,708 + -0.5 675,708 + -1.1 675,708 + +0.5 675,708 + +0.2 675,709 - +0.2 675,709 - +0.7 675,709 - -0.9 675,709 - -0.1 675,709 - -0.1 675,709 - -0.7 675,709 - -0.5 675,709 - +0.5 675,712 + +0.1 675,712 + -0.1 675,712 + -0.8 675,713 - +0.3 675,714 + -1.2 675,714 + -0.3 675,715 - +0.8 675,731 + +0.4 675,731 + +0.4 675,732 - -0.3 675,732 - +1.1 675,743 - +0.1 675,907 + OHPLBJKB_00657 0.19 +0.1 675,907 + OHPLBJKB_00657 0.19 -0.5 675,911 + OHPLBJKB_00657 0.19 +0.2 675,925 + OHPLBJKB_00657 0.20 -0.0 675,927 + OHPLBJKB_00657 0.21 -0.0
Or see this region's nucleotide sequence