Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00372

Experiment: T3 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00370 and OHPLBJKB_00371 are separated by 14 nucleotidesOHPLBJKB_00371 and OHPLBJKB_00372 overlap by 8 nucleotidesOHPLBJKB_00372 and OHPLBJKB_00373 overlap by 8 nucleotidesOHPLBJKB_00373 and OHPLBJKB_00374 overlap by 4 nucleotidesOHPLBJKB_00374 and OHPLBJKB_00375 are separated by 7 nucleotides OHPLBJKB_00370: OHPLBJKB_00370 - Putative type II secretion system protein L, at 401,473 to 402,636 _00370 OHPLBJKB_00371: OHPLBJKB_00371 - Putative type II secretion system protein K, at 402,651 to 403,634 _00371 OHPLBJKB_00372: OHPLBJKB_00372 - Putative type II secretion system protein J, at 403,627 to 404,214 _00372 OHPLBJKB_00373: OHPLBJKB_00373 - Putative type II secretion system protein I, at 404,207 to 404,584 _00373 OHPLBJKB_00374: OHPLBJKB_00374 - Putative type II secretion system protein H, at 404,581 to 405,090 _00374 OHPLBJKB_00375: OHPLBJKB_00375 - Putative type II secretion system protein G, at 405,098 to 405,535 _00375 Position (kb) 403 404 405Strain fitness (log2 ratio) -2 -1 0 1 2at 402.647 kb on - strandat 402.652 kb on + strandat 402.652 kb on + strandat 402.652 kb on + strandat 402.655 kb on + strandat 402.676 kb on + strandat 402.698 kb on + strandat 402.699 kb on - strandat 402.749 kb on + strandat 402.767 kb on + strand, within OHPLBJKB_00371at 402.768 kb on - strand, within OHPLBJKB_00371at 402.773 kb on - strand, within OHPLBJKB_00371at 402.779 kb on + strand, within OHPLBJKB_00371at 402.781 kb on + strand, within OHPLBJKB_00371at 402.900 kb on + strand, within OHPLBJKB_00371at 402.929 kb on + strand, within OHPLBJKB_00371at 402.940 kb on - strand, within OHPLBJKB_00371at 402.977 kb on + strand, within OHPLBJKB_00371at 402.977 kb on + strand, within OHPLBJKB_00371at 402.977 kb on + strand, within OHPLBJKB_00371at 402.977 kb on + strand, within OHPLBJKB_00371at 402.978 kb on - strand, within OHPLBJKB_00371at 402.978 kb on - strand, within OHPLBJKB_00371at 402.978 kb on - strand, within OHPLBJKB_00371at 402.978 kb on - strand, within OHPLBJKB_00371at 402.980 kb on + strand, within OHPLBJKB_00371at 402.981 kb on - strand, within OHPLBJKB_00371at 402.981 kb on - strand, within OHPLBJKB_00371at 402.992 kb on + strand, within OHPLBJKB_00371at 402.993 kb on - strand, within OHPLBJKB_00371at 403.021 kb on + strand, within OHPLBJKB_00371at 403.021 kb on + strand, within OHPLBJKB_00371at 403.040 kb on - strand, within OHPLBJKB_00371at 403.040 kb on - strand, within OHPLBJKB_00371at 403.062 kb on + strand, within OHPLBJKB_00371at 403.063 kb on - strand, within OHPLBJKB_00371at 403.071 kb on + strand, within OHPLBJKB_00371at 403.072 kb on - strand, within OHPLBJKB_00371at 403.139 kb on + strand, within OHPLBJKB_00371at 403.181 kb on + strand, within OHPLBJKB_00371at 403.181 kb on + strand, within OHPLBJKB_00371at 403.181 kb on + strand, within OHPLBJKB_00371at 403.181 kb on + strand, within OHPLBJKB_00371at 403.181 kb on + strand, within OHPLBJKB_00371at 403.181 kb on + strand, within OHPLBJKB_00371at 403.182 kb on - strand, within OHPLBJKB_00371at 403.182 kb on - strand, within OHPLBJKB_00371at 403.183 kb on + strand, within OHPLBJKB_00371at 403.183 kb on + strand, within OHPLBJKB_00371at 403.183 kb on + strand, within OHPLBJKB_00371at 403.184 kb on - strand, within OHPLBJKB_00371at 403.184 kb on - strand, within OHPLBJKB_00371at 403.184 kb on - strand, within OHPLBJKB_00371at 403.184 kb on - strand, within OHPLBJKB_00371at 403.184 kb on - strand, within OHPLBJKB_00371at 403.344 kb on + strand, within OHPLBJKB_00371at 403.362 kb on - strand, within OHPLBJKB_00371at 403.402 kb on + strand, within OHPLBJKB_00371at 403.436 kb on + strand, within OHPLBJKB_00371at 403.489 kb on + strand, within OHPLBJKB_00371at 403.489 kb on + strand, within OHPLBJKB_00371at 403.490 kb on - strand, within OHPLBJKB_00371at 403.587 kb on + strandat 403.596 kb on + strandat 403.596 kb on + strandat 403.597 kb on - strandat 403.638 kb on + strandat 403.642 kb on - strandat 403.642 kb on - strandat 403.741 kb on + strand, within OHPLBJKB_00372at 403.741 kb on + strand, within OHPLBJKB_00372at 403.871 kb on + strand, within OHPLBJKB_00372at 403.872 kb on - strand, within OHPLBJKB_00372at 403.872 kb on - strand, within OHPLBJKB_00372at 403.878 kb on + strand, within OHPLBJKB_00372at 403.959 kb on + strand, within OHPLBJKB_00372at 403.960 kb on - strand, within OHPLBJKB_00372at 404.062 kb on + strand, within OHPLBJKB_00372at 404.145 kb on + strand, within OHPLBJKB_00372at 404.234 kb on - strandat 404.295 kb on - strand, within OHPLBJKB_00373at 404.366 kb on + strand, within OHPLBJKB_00373at 404.367 kb on - strand, within OHPLBJKB_00373at 404.367 kb on - strand, within OHPLBJKB_00373at 404.367 kb on - strand, within OHPLBJKB_00373at 404.369 kb on + strand, within OHPLBJKB_00373at 404.369 kb on + strand, within OHPLBJKB_00373at 404.370 kb on - strand, within OHPLBJKB_00373at 404.370 kb on - strand, within OHPLBJKB_00373at 404.370 kb on - strand, within OHPLBJKB_00373at 404.497 kb on + strand, within OHPLBJKB_00373at 404.497 kb on + strand, within OHPLBJKB_00373at 404.497 kb on + strand, within OHPLBJKB_00373at 404.497 kb on + strand, within OHPLBJKB_00373at 404.638 kb on + strand, within OHPLBJKB_00374at 404.748 kb on + strand, within OHPLBJKB_00374at 404.748 kb on + strand, within OHPLBJKB_00374at 404.749 kb on - strand, within OHPLBJKB_00374at 404.818 kb on + strand, within OHPLBJKB_00374at 404.819 kb on - strand, within OHPLBJKB_00374at 404.819 kb on - strand, within OHPLBJKB_00374at 404.863 kb on - strand, within OHPLBJKB_00374at 404.863 kb on - strand, within OHPLBJKB_00374at 405.002 kb on + strand, within OHPLBJKB_00374at 405.003 kb on - strand, within OHPLBJKB_00374at 405.099 kb on + strandat 405.100 kb on - strandat 405.183 kb on + strand, within OHPLBJKB_00375at 405.183 kb on + strand, within OHPLBJKB_00375at 405.183 kb on + strand, within OHPLBJKB_00375at 405.184 kb on - strand, within OHPLBJKB_00375at 405.184 kb on - strand, within OHPLBJKB_00375at 405.184 kb on - strand, within OHPLBJKB_00375at 405.184 kb on - strand, within OHPLBJKB_00375

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Per-strain Table

Position Strand Gene LocusTag Fraction T3 MOI1
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402,647 - -0.6
402,652 + +0.2
402,652 + +0.9
402,652 + -0.8
402,655 + +0.5
402,676 + -2.0
402,698 + -0.6
402,699 - -0.3
402,749 + -0.0
402,767 + OHPLBJKB_00371 0.12 -0.3
402,768 - OHPLBJKB_00371 0.12 +0.9
402,773 - OHPLBJKB_00371 0.12 -0.4
402,779 + OHPLBJKB_00371 0.13 +0.2
402,781 + OHPLBJKB_00371 0.13 +0.0
402,900 + OHPLBJKB_00371 0.25 +0.4
402,929 + OHPLBJKB_00371 0.28 -0.1
402,940 - OHPLBJKB_00371 0.29 -0.1
402,977 + OHPLBJKB_00371 0.33 -0.6
402,977 + OHPLBJKB_00371 0.33 -0.1
402,977 + OHPLBJKB_00371 0.33 +1.6
402,977 + OHPLBJKB_00371 0.33 +0.8
402,978 - OHPLBJKB_00371 0.33 -1.0
402,978 - OHPLBJKB_00371 0.33 +0.4
402,978 - OHPLBJKB_00371 0.33 +0.8
402,978 - OHPLBJKB_00371 0.33 -0.0
402,980 + OHPLBJKB_00371 0.33 +0.7
402,981 - OHPLBJKB_00371 0.34 +0.3
402,981 - OHPLBJKB_00371 0.34 +0.5
402,992 + OHPLBJKB_00371 0.35 +0.2
402,993 - OHPLBJKB_00371 0.35 +0.4
403,021 + OHPLBJKB_00371 0.38 -0.0
403,021 + OHPLBJKB_00371 0.38 -0.8
403,040 - OHPLBJKB_00371 0.40 -2.7
403,040 - OHPLBJKB_00371 0.40 +0.6
403,062 + OHPLBJKB_00371 0.42 -0.1
403,063 - OHPLBJKB_00371 0.42 -0.1
403,071 + OHPLBJKB_00371 0.43 -0.2
403,072 - OHPLBJKB_00371 0.43 +0.3
403,139 + OHPLBJKB_00371 0.50 -1.2
403,181 + OHPLBJKB_00371 0.54 -0.0
403,181 + OHPLBJKB_00371 0.54 +0.3
403,181 + OHPLBJKB_00371 0.54 -0.1
403,181 + OHPLBJKB_00371 0.54 +0.4
403,181 + OHPLBJKB_00371 0.54 +0.2
403,181 + OHPLBJKB_00371 0.54 +0.5
403,182 - OHPLBJKB_00371 0.54 -0.1
403,182 - OHPLBJKB_00371 0.54 -0.4
403,183 + OHPLBJKB_00371 0.54 +0.5
403,183 + OHPLBJKB_00371 0.54 -1.2
403,183 + OHPLBJKB_00371 0.54 -0.0
403,184 - OHPLBJKB_00371 0.54 +0.1
403,184 - OHPLBJKB_00371 0.54 +0.4
403,184 - OHPLBJKB_00371 0.54 +1.5
403,184 - OHPLBJKB_00371 0.54 -1.6
403,184 - OHPLBJKB_00371 0.54 +0.1
403,344 + OHPLBJKB_00371 0.70 -0.2
403,362 - OHPLBJKB_00371 0.72 +0.3
403,402 + OHPLBJKB_00371 0.76 -0.0
403,436 + OHPLBJKB_00371 0.80 -0.4
403,489 + OHPLBJKB_00371 0.85 +0.5
403,489 + OHPLBJKB_00371 0.85 -1.5
403,490 - OHPLBJKB_00371 0.85 +0.4
403,587 + -0.2
403,596 + +0.0
403,596 + +0.6
403,597 - +0.6
403,638 + -1.0
403,642 - +0.0
403,642 - -0.7
403,741 + OHPLBJKB_00372 0.19 -0.2
403,741 + OHPLBJKB_00372 0.19 +0.6
403,871 + OHPLBJKB_00372 0.41 +0.0
403,872 - OHPLBJKB_00372 0.42 +1.4
403,872 - OHPLBJKB_00372 0.42 +0.9
403,878 + OHPLBJKB_00372 0.43 +1.9
403,959 + OHPLBJKB_00372 0.56 +0.8
403,960 - OHPLBJKB_00372 0.57 -0.7
404,062 + OHPLBJKB_00372 0.74 -0.3
404,145 + OHPLBJKB_00372 0.88 +0.1
404,234 - +0.0
404,295 - OHPLBJKB_00373 0.23 +0.2
404,366 + OHPLBJKB_00373 0.42 -0.0
404,367 - OHPLBJKB_00373 0.42 +0.2
404,367 - OHPLBJKB_00373 0.42 -0.8
404,367 - OHPLBJKB_00373 0.42 -0.4
404,369 + OHPLBJKB_00373 0.43 +0.4
404,369 + OHPLBJKB_00373 0.43 +0.3
404,370 - OHPLBJKB_00373 0.43 +0.0
404,370 - OHPLBJKB_00373 0.43 +0.1
404,370 - OHPLBJKB_00373 0.43 -0.3
404,497 + OHPLBJKB_00373 0.77 -1.6
404,497 + OHPLBJKB_00373 0.77 -0.4
404,497 + OHPLBJKB_00373 0.77 -0.3
404,497 + OHPLBJKB_00373 0.77 -0.8
404,638 + OHPLBJKB_00374 0.11 +0.6
404,748 + OHPLBJKB_00374 0.33 +0.8
404,748 + OHPLBJKB_00374 0.33 +0.2
404,749 - OHPLBJKB_00374 0.33 -1.2
404,818 + OHPLBJKB_00374 0.46 +0.7
404,819 - OHPLBJKB_00374 0.47 +0.2
404,819 - OHPLBJKB_00374 0.47 -0.2
404,863 - OHPLBJKB_00374 0.55 -0.2
404,863 - OHPLBJKB_00374 0.55 -0.8
405,002 + OHPLBJKB_00374 0.83 +0.0
405,003 - OHPLBJKB_00374 0.83 +0.3
405,099 + +0.1
405,100 - -0.3
405,183 + OHPLBJKB_00375 0.19 -0.3
405,183 + OHPLBJKB_00375 0.19 -0.2
405,183 + OHPLBJKB_00375 0.19 -0.3
405,184 - OHPLBJKB_00375 0.20 +1.7
405,184 - OHPLBJKB_00375 0.20 -0.1
405,184 - OHPLBJKB_00375 0.20 -0.1
405,184 - OHPLBJKB_00375 0.20 -0.2

Or see this region's nucleotide sequence