Experiment: Amylopectin from Potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS14330 and ABI39_RS14335 are separated by 127 nucleotides ABI39_RS14335 and ABI39_RS22805 are separated by 37 nucleotides ABI39_RS22805 and ABI39_RS14340 overlap by 4 nucleotides ABI39_RS14340 and ABI39_RS14345 are separated by 121 nucleotides
ABI39_RS14330: ABI39_RS14330 - OprO/OprP family phosphate-selective porin, at 3,722,746 to 3,723,915
_RS14330
ABI39_RS14335: ABI39_RS14335 - antitoxin, at 3,724,043 to 3,724,234
_RS14335
ABI39_RS22805: ABI39_RS22805 - hypothetical protein, at 3,724,272 to 3,724,448
_RS22805
ABI39_RS14340: ABI39_RS14340 - nucleotidyltransferase domain-containing protein, at 3,724,445 to 3,724,759
_RS14340
ABI39_RS14345: ABI39_RS14345 - dicarboxylate/amino acid:cation symporter, at 3,724,881 to 3,726,059
_RS14345
Position (kb) 3724
3725 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 3723.072 kb on - strand, within ABI39_RS14330 at 3723.076 kb on - strand, within ABI39_RS14330 at 3723.081 kb on - strand, within ABI39_RS14330 at 3723.081 kb on - strand, within ABI39_RS14330 at 3723.084 kb on + strand, within ABI39_RS14330 at 3723.161 kb on - strand, within ABI39_RS14330 at 3723.170 kb on + strand, within ABI39_RS14330 at 3723.457 kb on + strand, within ABI39_RS14330 at 3723.483 kb on + strand, within ABI39_RS14330 at 3723.523 kb on + strand, within ABI39_RS14330 at 3723.557 kb on + strand, within ABI39_RS14330 at 3723.566 kb on + strand, within ABI39_RS14330 at 3723.569 kb on + strand, within ABI39_RS14330 at 3723.612 kb on + strand, within ABI39_RS14330 at 3723.613 kb on - strand, within ABI39_RS14330 at 3723.699 kb on + strand, within ABI39_RS14330 at 3723.699 kb on + strand, within ABI39_RS14330 at 3723.976 kb on + strand at 3724.013 kb on + strand at 3724.101 kb on + strand, within ABI39_RS14335 at 3724.106 kb on + strand, within ABI39_RS14335 at 3724.358 kb on + strand, within ABI39_RS22805 at 3724.358 kb on + strand, within ABI39_RS22805 at 3724.361 kb on - strand, within ABI39_RS22805 at 3724.448 kb on + strand at 3724.543 kb on + strand, within ABI39_RS14340 at 3724.543 kb on + strand, within ABI39_RS14340 at 3724.735 kb on + strand at 3724.740 kb on - strand at 3724.785 kb on - strand at 3724.887 kb on + strand at 3724.888 kb on - strand at 3724.990 kb on + strand at 3725.121 kb on - strand, within ABI39_RS14345
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato (C) remove 3,723,072 - ABI39_RS14330 0.28 -0.2 3,723,076 - ABI39_RS14330 0.28 +0.9 3,723,081 - ABI39_RS14330 0.29 +0.3 3,723,081 - ABI39_RS14330 0.29 -0.0 3,723,084 + ABI39_RS14330 0.29 -0.0 3,723,161 - ABI39_RS14330 0.35 +0.3 3,723,170 + ABI39_RS14330 0.36 +0.1 3,723,457 + ABI39_RS14330 0.61 -1.0 3,723,483 + ABI39_RS14330 0.63 -0.6 3,723,523 + ABI39_RS14330 0.66 +1.0 3,723,557 + ABI39_RS14330 0.69 -0.4 3,723,566 + ABI39_RS14330 0.70 +0.9 3,723,569 + ABI39_RS14330 0.70 -0.0 3,723,612 + ABI39_RS14330 0.74 -0.4 3,723,613 - ABI39_RS14330 0.74 +0.0 3,723,699 + ABI39_RS14330 0.81 -0.7 3,723,699 + ABI39_RS14330 0.81 +1.2 3,723,976 + -1.1 3,724,013 + -0.5 3,724,101 + ABI39_RS14335 0.30 +1.8 3,724,106 + ABI39_RS14335 0.33 +0.2 3,724,358 + ABI39_RS22805 0.49 -4.7 3,724,358 + ABI39_RS22805 0.49 -0.5 3,724,361 - ABI39_RS22805 0.50 -0.2 3,724,448 + +0.4 3,724,543 + ABI39_RS14340 0.31 +0.8 3,724,543 + ABI39_RS14340 0.31 -1.0 3,724,735 + -0.4 3,724,740 - +0.4 3,724,785 - +0.1 3,724,887 + -3.4 3,724,888 - +0.0 3,724,990 + +0.3 3,725,121 - ABI39_RS14345 0.20 -0.2
Or see this region's nucleotide sequence