Experiment: Amylopectin from Potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02825 and ABI39_RS02830 are separated by 265 nucleotides ABI39_RS02830 and ABI39_RS02835 are separated by 104 nucleotides ABI39_RS02835 and ABI39_RS02840 are separated by 149 nucleotides ABI39_RS02840 and ABI39_RS02845 are separated by 18 nucleotides
ABI39_RS02825: ABI39_RS02825 - response regulator, at 819,162 to 823,094
_RS02825
ABI39_RS02830: ABI39_RS02830 - RNA-binding protein, at 823,360 to 823,605
_RS02830
ABI39_RS02835: ABI39_RS02835 - threonine/serine exporter family protein, at 823,710 to 825,056
_RS02835
ABI39_RS02840: ABI39_RS02840 - PASTA domain-containing protein, at 825,206 to 825,847
_RS02840
ABI39_RS02845: ABI39_RS02845 - RluA family pseudouridine synthase, at 825,866 to 826,939
_RS02845
Position (kb) 823
824
825
826 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 822.790 kb on + strand at 822.871 kb on - strand at 822.915 kb on - strand at 822.941 kb on + strand at 823.145 kb on - strand at 823.167 kb on - strand at 823.185 kb on + strand at 823.241 kb on + strand at 823.265 kb on + strand at 823.366 kb on - strand at 823.370 kb on - strand at 823.387 kb on + strand, within ABI39_RS02830 at 823.387 kb on + strand, within ABI39_RS02830 at 823.603 kb on + strand at 823.603 kb on + strand at 823.604 kb on - strand at 823.669 kb on + strand at 823.689 kb on + strand at 823.702 kb on + strand at 823.841 kb on + strand at 823.986 kb on - strand, within ABI39_RS02835 at 824.074 kb on - strand, within ABI39_RS02835 at 824.103 kb on + strand, within ABI39_RS02835 at 824.121 kb on + strand, within ABI39_RS02835 at 824.203 kb on + strand, within ABI39_RS02835 at 824.203 kb on + strand, within ABI39_RS02835 at 824.203 kb on + strand, within ABI39_RS02835 at 824.351 kb on + strand, within ABI39_RS02835 at 824.355 kb on + strand, within ABI39_RS02835 at 824.355 kb on + strand, within ABI39_RS02835 at 824.426 kb on + strand, within ABI39_RS02835 at 824.495 kb on + strand, within ABI39_RS02835 at 824.500 kb on - strand, within ABI39_RS02835 at 824.526 kb on - strand, within ABI39_RS02835 at 824.527 kb on + strand, within ABI39_RS02835 at 824.529 kb on + strand, within ABI39_RS02835 at 824.530 kb on - strand, within ABI39_RS02835 at 824.530 kb on - strand, within ABI39_RS02835 at 824.675 kb on - strand, within ABI39_RS02835 at 824.675 kb on - strand, within ABI39_RS02835 at 824.725 kb on + strand, within ABI39_RS02835 at 824.726 kb on - strand, within ABI39_RS02835 at 824.802 kb on - strand, within ABI39_RS02835 at 824.997 kb on + strand at 825.205 kb on + strand at 825.851 kb on + strand at 826.001 kb on + strand, within ABI39_RS02845
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato (C) remove 822,790 + -1.2 822,871 - -0.1 822,915 - +0.4 822,941 + -0.1 823,145 - -0.1 823,167 - -0.5 823,185 + -0.7 823,241 + -0.1 823,265 + +0.2 823,366 - +1.6 823,370 - +0.0 823,387 + ABI39_RS02830 0.11 -1.3 823,387 + ABI39_RS02830 0.11 +0.4 823,603 + +0.7 823,603 + -0.1 823,604 - -0.8 823,669 + -0.1 823,689 + -1.0 823,702 + +0.0 823,841 + -0.9 823,986 - ABI39_RS02835 0.20 -0.1 824,074 - ABI39_RS02835 0.27 +0.0 824,103 + ABI39_RS02835 0.29 +0.1 824,121 + ABI39_RS02835 0.31 -1.6 824,203 + ABI39_RS02835 0.37 -0.3 824,203 + ABI39_RS02835 0.37 -0.5 824,203 + ABI39_RS02835 0.37 -1.2 824,351 + ABI39_RS02835 0.48 +0.9 824,355 + ABI39_RS02835 0.48 +0.9 824,355 + ABI39_RS02835 0.48 +0.1 824,426 + ABI39_RS02835 0.53 -0.2 824,495 + ABI39_RS02835 0.58 -0.7 824,500 - ABI39_RS02835 0.59 +0.0 824,526 - ABI39_RS02835 0.61 +0.8 824,527 + ABI39_RS02835 0.61 -1.0 824,529 + ABI39_RS02835 0.61 -0.2 824,530 - ABI39_RS02835 0.61 +0.0 824,530 - ABI39_RS02835 0.61 +0.4 824,675 - ABI39_RS02835 0.72 +0.6 824,675 - ABI39_RS02835 0.72 +0.1 824,725 + ABI39_RS02835 0.75 -0.1 824,726 - ABI39_RS02835 0.75 +0.1 824,802 - ABI39_RS02835 0.81 -2.9 824,997 + -0.3 825,205 + +0.4 825,851 + +0.3 826,001 + ABI39_RS02845 0.13 -0.6
Or see this region's nucleotide sequence