Experiment: Amylopectin from Potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01030 and ABI39_RS21540 are separated by 352 nucleotides ABI39_RS21540 and ABI39_RS01035 are separated by 478 nucleotides ABI39_RS01035 and ABI39_RS01040 are separated by 707 nucleotides
ABI39_RS01030: ABI39_RS01030 - glycosyl hydrolase family 2, at 331,494 to 334,256
_RS01030
ABI39_RS21540: ABI39_RS21540 - hypothetical protein, at 334,609 to 334,732
_RS21540
ABI39_RS01035: ABI39_RS01035 - isoaspartyl peptidase/L-asparaginase, at 335,211 to 336,197
_RS01035
ABI39_RS01040: ABI39_RS01040 - L-rhamnose mutarotase, at 336,905 to 337,294
_RS01040
Position (kb) 335
336
337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 334.216 kb on + strand at 334.229 kb on - strand at 334.229 kb on - strand at 334.248 kb on + strand at 334.248 kb on + strand at 334.251 kb on - strand at 334.338 kb on - strand at 334.344 kb on + strand at 334.469 kb on + strand at 334.470 kb on - strand at 334.471 kb on + strand at 334.566 kb on + strand at 334.584 kb on - strand at 335.278 kb on + strand at 335.279 kb on - strand at 335.453 kb on - strand, within ABI39_RS01035 at 335.714 kb on + strand, within ABI39_RS01035 at 335.715 kb on - strand, within ABI39_RS01035 at 335.717 kb on + strand, within ABI39_RS01035 at 335.882 kb on + strand, within ABI39_RS01035 at 335.883 kb on - strand, within ABI39_RS01035 at 336.013 kb on - strand, within ABI39_RS01035 at 336.056 kb on - strand, within ABI39_RS01035 at 336.163 kb on - strand at 336.187 kb on - strand at 336.208 kb on + strand at 336.220 kb on + strand at 336.221 kb on - strand at 336.263 kb on + strand at 336.276 kb on - strand at 336.464 kb on + strand at 336.464 kb on + strand at 336.465 kb on - strand at 336.465 kb on - strand at 336.671 kb on - strand at 336.843 kb on + strand at 336.914 kb on + strand at 336.929 kb on - strand at 336.991 kb on + strand, within ABI39_RS01040 at 337.091 kb on - strand, within ABI39_RS01040
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato (C) remove 334,216 + -2.5 334,229 - -0.8 334,229 - -0.3 334,248 + +0.1 334,248 + +1.8 334,251 - -0.0 334,338 - +0.5 334,344 + +1.0 334,469 + +0.6 334,470 - +0.6 334,471 + +0.1 334,566 + +1.5 334,584 - +0.1 335,278 + +1.0 335,279 - +0.4 335,453 - ABI39_RS01035 0.25 +1.2 335,714 + ABI39_RS01035 0.51 -2.0 335,715 - ABI39_RS01035 0.51 +0.2 335,717 + ABI39_RS01035 0.51 -0.4 335,882 + ABI39_RS01035 0.68 +0.3 335,883 - ABI39_RS01035 0.68 +0.4 336,013 - ABI39_RS01035 0.81 +0.7 336,056 - ABI39_RS01035 0.86 +0.0 336,163 - -1.1 336,187 - -0.9 336,208 + -1.4 336,220 + +0.5 336,221 - -0.3 336,263 + -0.9 336,276 - +0.3 336,464 + +0.4 336,464 + +0.2 336,465 - +0.1 336,465 - +0.1 336,671 - -0.3 336,843 + -0.4 336,914 + -2.8 336,929 - -0.5 336,991 + ABI39_RS01040 0.22 -0.4 337,091 - ABI39_RS01040 0.48 -1.1
Or see this region's nucleotide sequence