Experiment: N4 MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00767 and OHPLBJKB_00768 are separated by 120 nucleotides OHPLBJKB_00768 and OHPLBJKB_00769 are separated by 6 nucleotides OHPLBJKB_00769 and OHPLBJKB_00770 overlap by 1 nucleotides
OHPLBJKB_00767: OHPLBJKB_00767 - IS110 family transposase IS621, at 788,110 to 789,090
_00767
OHPLBJKB_00768: OHPLBJKB_00768 - hypothetical protein, at 789,211 to 789,339
_00768
OHPLBJKB_00769: OHPLBJKB_00769 - Putative pre-16S rRNA nuclease, at 789,346 to 789,762
_00769
OHPLBJKB_00770: OHPLBJKB_00770 - hypothetical protein, at 789,762 to 790,397
_00770
Position (kb) 789
790 Strain fitness (log2 ratio) -1
0
1
2 at 789.187 kb on + strand at 789.193 kb on + strand at 789.193 kb on + strand at 789.197 kb on + strand at 789.197 kb on + strand at 789.197 kb on + strand at 789.208 kb on + strand at 789.208 kb on + strand at 789.208 kb on + strand at 789.209 kb on - strand at 789.237 kb on + strand, within OHPLBJKB_00768 at 789.246 kb on + strand, within OHPLBJKB_00768 at 789.247 kb on - strand, within OHPLBJKB_00768 at 789.247 kb on - strand, within OHPLBJKB_00768 at 789.337 kb on + strand at 789.338 kb on - strand at 789.347 kb on + strand at 789.955 kb on - strand, within OHPLBJKB_00770 at 790.239 kb on - strand, within OHPLBJKB_00770 at 790.239 kb on - strand, within OHPLBJKB_00770 at 790.239 kb on - strand, within OHPLBJKB_00770 at 790.302 kb on - strand, within OHPLBJKB_00770 at 790.318 kb on - strand, within OHPLBJKB_00770
Per-strain Table
Position Strand Gene LocusTag Fraction N4 MOI1 remove 789,187 + +0.5 789,193 + +0.2 789,193 + +0.1 789,197 + -0.3 789,197 + -0.7 789,197 + +0.3 789,208 + -1.2 789,208 + -0.6 789,208 + +0.0 789,209 - +0.3 789,237 + OHPLBJKB_00768 0.20 +0.5 789,246 + OHPLBJKB_00768 0.27 +0.4 789,247 - OHPLBJKB_00768 0.28 -1.3 789,247 - OHPLBJKB_00768 0.28 +1.9 789,337 + -0.2 789,338 - +0.6 789,347 + -0.2 789,955 - OHPLBJKB_00770 0.30 +0.5 790,239 - OHPLBJKB_00770 0.75 +0.2 790,239 - OHPLBJKB_00770 0.75 +0.8 790,239 - OHPLBJKB_00770 0.75 -0.0 790,302 - OHPLBJKB_00770 0.85 -0.1 790,318 - OHPLBJKB_00770 0.87 -0.9
Or see this region's nucleotide sequence