Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00587

Experiment: N4 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00586 and OHPLBJKB_00587 are separated by 13 nucleotidesOHPLBJKB_00587 and OHPLBJKB_00588 are separated by 71 nucleotides OHPLBJKB_00586: OHPLBJKB_00586 - PFL-like enzyme TdcE, at 599,645 to 601,939 _00586 OHPLBJKB_00587: OHPLBJKB_00587 - Putative reactive intermediate deaminase TdcF, at 601,953 to 602,342 _00587 OHPLBJKB_00588: OHPLBJKB_00588 - L-serine dehydratase TdcG, at 602,414 to 603,778 _00588 Position (kb) 601 602 603Strain fitness (log2 ratio) -2 -1 0 1 2 3at 601.127 kb on + strand, within OHPLBJKB_00586at 601.127 kb on + strand, within OHPLBJKB_00586at 601.127 kb on + strand, within OHPLBJKB_00586at 601.128 kb on - strand, within OHPLBJKB_00586at 601.128 kb on - strand, within OHPLBJKB_00586at 601.128 kb on - strand, within OHPLBJKB_00586at 601.154 kb on + strand, within OHPLBJKB_00586at 601.154 kb on + strand, within OHPLBJKB_00586at 601.154 kb on + strand, within OHPLBJKB_00586at 601.155 kb on - strand, within OHPLBJKB_00586at 601.155 kb on - strand, within OHPLBJKB_00586at 601.155 kb on - strand, within OHPLBJKB_00586at 601.169 kb on + strand, within OHPLBJKB_00586at 601.169 kb on + strand, within OHPLBJKB_00586at 601.169 kb on + strand, within OHPLBJKB_00586at 601.170 kb on - strand, within OHPLBJKB_00586at 601.170 kb on - strand, within OHPLBJKB_00586at 601.170 kb on - strand, within OHPLBJKB_00586at 601.170 kb on - strand, within OHPLBJKB_00586at 601.170 kb on - strand, within OHPLBJKB_00586at 601.170 kb on - strand, within OHPLBJKB_00586at 601.175 kb on + strand, within OHPLBJKB_00586at 601.223 kb on - strand, within OHPLBJKB_00586at 601.281 kb on - strand, within OHPLBJKB_00586at 601.281 kb on - strand, within OHPLBJKB_00586at 601.378 kb on - strand, within OHPLBJKB_00586at 601.475 kb on - strand, within OHPLBJKB_00586at 601.483 kb on + strand, within OHPLBJKB_00586at 601.483 kb on + strand, within OHPLBJKB_00586at 601.511 kb on - strand, within OHPLBJKB_00586at 601.513 kb on + strand, within OHPLBJKB_00586at 601.514 kb on - strand, within OHPLBJKB_00586at 601.702 kb on + strand, within OHPLBJKB_00586at 601.702 kb on + strand, within OHPLBJKB_00586at 601.703 kb on - strand, within OHPLBJKB_00586at 601.733 kb on + strandat 601.734 kb on - strandat 601.785 kb on + strandat 601.786 kb on - strandat 601.786 kb on - strandat 601.910 kb on - strandat 601.919 kb on - strandat 601.919 kb on - strandat 601.919 kb on - strandat 601.919 kb on - strandat 601.952 kb on + strandat 601.953 kb on - strandat 602.001 kb on + strand, within OHPLBJKB_00587at 602.002 kb on - strand, within OHPLBJKB_00587at 602.050 kb on + strand, within OHPLBJKB_00587at 602.051 kb on - strand, within OHPLBJKB_00587at 602.051 kb on - strand, within OHPLBJKB_00587at 602.223 kb on + strand, within OHPLBJKB_00587at 602.224 kb on - strand, within OHPLBJKB_00587at 602.224 kb on - strand, within OHPLBJKB_00587at 602.224 kb on - strand, within OHPLBJKB_00587at 602.224 kb on - strand, within OHPLBJKB_00587at 602.224 kb on - strand, within OHPLBJKB_00587at 602.256 kb on + strand, within OHPLBJKB_00587at 602.329 kb on + strandat 602.329 kb on + strandat 602.329 kb on + strandat 602.330 kb on - strandat 602.330 kb on - strandat 602.333 kb on + strandat 602.333 kb on + strandat 602.333 kb on + strandat 602.333 kb on + strandat 602.333 kb on + strandat 602.333 kb on + strandat 602.333 kb on + strandat 602.334 kb on - strandat 602.334 kb on - strandat 602.334 kb on - strandat 602.334 kb on - strandat 602.334 kb on - strandat 602.334 kb on - strandat 602.334 kb on - strandat 602.341 kb on - strandat 602.366 kb on - strandat 602.413 kb on + strandat 602.414 kb on - strandat 602.420 kb on - strandat 602.500 kb on + strandat 602.527 kb on - strandat 602.527 kb on - strandat 602.527 kb on - strandat 602.527 kb on - strandat 602.546 kb on - strandat 602.546 kb on - strandat 602.671 kb on + strand, within OHPLBJKB_00588at 602.672 kb on - strand, within OHPLBJKB_00588at 602.672 kb on - strand, within OHPLBJKB_00588at 602.672 kb on - strand, within OHPLBJKB_00588at 602.672 kb on - strand, within OHPLBJKB_00588at 602.672 kb on - strand, within OHPLBJKB_00588at 602.672 kb on - strand, within OHPLBJKB_00588at 602.673 kb on + strand, within OHPLBJKB_00588at 602.673 kb on + strand, within OHPLBJKB_00588at 602.673 kb on + strand, within OHPLBJKB_00588at 602.674 kb on - strand, within OHPLBJKB_00588at 602.679 kb on + strand, within OHPLBJKB_00588at 602.679 kb on + strand, within OHPLBJKB_00588at 602.679 kb on + strand, within OHPLBJKB_00588at 602.680 kb on - strand, within OHPLBJKB_00588at 602.680 kb on - strand, within OHPLBJKB_00588at 602.680 kb on - strand, within OHPLBJKB_00588at 602.680 kb on - strand, within OHPLBJKB_00588at 602.680 kb on - strand, within OHPLBJKB_00588at 602.683 kb on - strand, within OHPLBJKB_00588at 602.722 kb on + strand, within OHPLBJKB_00588at 602.752 kb on + strand, within OHPLBJKB_00588at 602.752 kb on + strand, within OHPLBJKB_00588at 602.826 kb on + strand, within OHPLBJKB_00588at 602.826 kb on + strand, within OHPLBJKB_00588at 602.827 kb on - strand, within OHPLBJKB_00588at 602.827 kb on - strand, within OHPLBJKB_00588at 602.829 kb on + strand, within OHPLBJKB_00588at 602.829 kb on + strand, within OHPLBJKB_00588at 602.829 kb on + strand, within OHPLBJKB_00588at 602.829 kb on + strand, within OHPLBJKB_00588at 602.830 kb on - strand, within OHPLBJKB_00588at 602.830 kb on - strand, within OHPLBJKB_00588at 602.840 kb on + strand, within OHPLBJKB_00588at 602.840 kb on + strand, within OHPLBJKB_00588at 602.840 kb on + strand, within OHPLBJKB_00588at 602.841 kb on - strand, within OHPLBJKB_00588at 602.841 kb on - strand, within OHPLBJKB_00588at 602.841 kb on - strand, within OHPLBJKB_00588at 602.841 kb on - strand, within OHPLBJKB_00588at 602.843 kb on + strand, within OHPLBJKB_00588at 602.843 kb on + strand, within OHPLBJKB_00588at 602.843 kb on + strand, within OHPLBJKB_00588at 602.843 kb on + strand, within OHPLBJKB_00588at 602.844 kb on - strand, within OHPLBJKB_00588at 602.844 kb on - strand, within OHPLBJKB_00588at 602.844 kb on - strand, within OHPLBJKB_00588at 602.864 kb on - strand, within OHPLBJKB_00588at 602.864 kb on - strand, within OHPLBJKB_00588at 602.914 kb on - strand, within OHPLBJKB_00588at 602.960 kb on + strand, within OHPLBJKB_00588at 602.960 kb on + strand, within OHPLBJKB_00588at 602.961 kb on - strand, within OHPLBJKB_00588at 602.961 kb on - strand, within OHPLBJKB_00588at 602.974 kb on + strand, within OHPLBJKB_00588at 602.974 kb on + strand, within OHPLBJKB_00588at 602.974 kb on + strand, within OHPLBJKB_00588at 603.003 kb on + strand, within OHPLBJKB_00588at 603.004 kb on - strand, within OHPLBJKB_00588at 603.004 kb on - strand, within OHPLBJKB_00588at 603.212 kb on + strand, within OHPLBJKB_00588at 603.213 kb on - strand, within OHPLBJKB_00588at 603.213 kb on - strand, within OHPLBJKB_00588at 603.311 kb on + strand, within OHPLBJKB_00588at 603.311 kb on + strand, within OHPLBJKB_00588at 603.312 kb on - strand, within OHPLBJKB_00588at 603.312 kb on - strand, within OHPLBJKB_00588at 603.316 kb on + strand, within OHPLBJKB_00588at 603.317 kb on - strand, within OHPLBJKB_00588

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Per-strain Table

Position Strand Gene LocusTag Fraction N4 MOI1
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601,127 + OHPLBJKB_00586 0.65 -0.7
601,127 + OHPLBJKB_00586 0.65 -0.3
601,127 + OHPLBJKB_00586 0.65 -0.1
601,128 - OHPLBJKB_00586 0.65 +2.0
601,128 - OHPLBJKB_00586 0.65 +0.4
601,128 - OHPLBJKB_00586 0.65 +0.3
601,154 + OHPLBJKB_00586 0.66 +0.0
601,154 + OHPLBJKB_00586 0.66 -0.0
601,154 + OHPLBJKB_00586 0.66 -0.1
601,155 - OHPLBJKB_00586 0.66 -0.3
601,155 - OHPLBJKB_00586 0.66 -0.1
601,155 - OHPLBJKB_00586 0.66 +0.1
601,169 + OHPLBJKB_00586 0.66 -0.2
601,169 + OHPLBJKB_00586 0.66 +0.6
601,169 + OHPLBJKB_00586 0.66 -1.0
601,170 - OHPLBJKB_00586 0.66 -1.1
601,170 - OHPLBJKB_00586 0.66 -0.8
601,170 - OHPLBJKB_00586 0.66 +0.2
601,170 - OHPLBJKB_00586 0.66 -0.1
601,170 - OHPLBJKB_00586 0.66 -0.5
601,170 - OHPLBJKB_00586 0.66 -0.2
601,175 + OHPLBJKB_00586 0.67 +0.3
601,223 - OHPLBJKB_00586 0.69 +0.5
601,281 - OHPLBJKB_00586 0.71 -0.0
601,281 - OHPLBJKB_00586 0.71 +0.4
601,378 - OHPLBJKB_00586 0.76 -0.3
601,475 - OHPLBJKB_00586 0.80 +0.2
601,483 + OHPLBJKB_00586 0.80 -0.6
601,483 + OHPLBJKB_00586 0.80 -0.2
601,511 - OHPLBJKB_00586 0.81 -0.7
601,513 + OHPLBJKB_00586 0.81 +0.0
601,514 - OHPLBJKB_00586 0.81 +0.4
601,702 + OHPLBJKB_00586 0.90 -1.4
601,702 + OHPLBJKB_00586 0.90 -0.0
601,703 - OHPLBJKB_00586 0.90 -0.8
601,733 + -0.1
601,734 - +0.7
601,785 + +0.4
601,786 - -0.2
601,786 - +0.3
601,910 - +0.3
601,919 - -0.1
601,919 - +0.5
601,919 - +1.1
601,919 - -1.0
601,952 + -0.9
601,953 - +0.2
602,001 + OHPLBJKB_00587 0.12 -1.6
602,002 - OHPLBJKB_00587 0.13 +0.8
602,050 + OHPLBJKB_00587 0.25 +0.3
602,051 - OHPLBJKB_00587 0.25 -0.1
602,051 - OHPLBJKB_00587 0.25 +0.0
602,223 + OHPLBJKB_00587 0.69 +0.5
602,224 - OHPLBJKB_00587 0.69 +0.7
602,224 - OHPLBJKB_00587 0.69 +0.2
602,224 - OHPLBJKB_00587 0.69 +0.9
602,224 - OHPLBJKB_00587 0.69 -0.6
602,224 - OHPLBJKB_00587 0.69 +0.8
602,256 + OHPLBJKB_00587 0.78 +1.2
602,329 + +0.3
602,329 + +0.0
602,329 + +0.0
602,330 - -0.2
602,330 - -0.2
602,333 + -1.2
602,333 + -0.4
602,333 + +0.0
602,333 + +0.1
602,333 + +0.1
602,333 + +0.6
602,333 + -0.3
602,334 - -0.2
602,334 - -0.0
602,334 - +0.3
602,334 - +0.0
602,334 - +0.1
602,334 - +0.1
602,334 - +0.1
602,341 - -0.0
602,366 - +0.4
602,413 + +0.4
602,414 - -0.5
602,420 - +0.1
602,500 + -0.2
602,527 - +0.3
602,527 - +0.0
602,527 - +0.1
602,527 - -0.2
602,546 - +0.4
602,546 - -0.1
602,671 + OHPLBJKB_00588 0.19 -0.7
602,672 - OHPLBJKB_00588 0.19 +0.6
602,672 - OHPLBJKB_00588 0.19 +0.6
602,672 - OHPLBJKB_00588 0.19 +0.2
602,672 - OHPLBJKB_00588 0.19 +0.7
602,672 - OHPLBJKB_00588 0.19 -1.5
602,672 - OHPLBJKB_00588 0.19 -0.3
602,673 + OHPLBJKB_00588 0.19 +0.9
602,673 + OHPLBJKB_00588 0.19 -0.1
602,673 + OHPLBJKB_00588 0.19 -0.3
602,674 - OHPLBJKB_00588 0.19 -0.1
602,679 + OHPLBJKB_00588 0.19 +0.8
602,679 + OHPLBJKB_00588 0.19 -1.3
602,679 + OHPLBJKB_00588 0.19 -0.5
602,680 - OHPLBJKB_00588 0.19 -0.2
602,680 - OHPLBJKB_00588 0.19 -0.2
602,680 - OHPLBJKB_00588 0.19 +0.6
602,680 - OHPLBJKB_00588 0.19 -0.4
602,680 - OHPLBJKB_00588 0.19 +0.3
602,683 - OHPLBJKB_00588 0.20 -0.7
602,722 + OHPLBJKB_00588 0.23 -0.2
602,752 + OHPLBJKB_00588 0.25 -0.1
602,752 + OHPLBJKB_00588 0.25 +0.3
602,826 + OHPLBJKB_00588 0.30 -0.7
602,826 + OHPLBJKB_00588 0.30 -1.9
602,827 - OHPLBJKB_00588 0.30 +0.6
602,827 - OHPLBJKB_00588 0.30 +0.4
602,829 + OHPLBJKB_00588 0.30 +1.5
602,829 + OHPLBJKB_00588 0.30 +0.3
602,829 + OHPLBJKB_00588 0.30 -0.2
602,829 + OHPLBJKB_00588 0.30 -2.0
602,830 - OHPLBJKB_00588 0.30 +0.4
602,830 - OHPLBJKB_00588 0.30 +0.4
602,840 + OHPLBJKB_00588 0.31 +0.0
602,840 + OHPLBJKB_00588 0.31 +0.2
602,840 + OHPLBJKB_00588 0.31 -0.3
602,841 - OHPLBJKB_00588 0.31 +0.6
602,841 - OHPLBJKB_00588 0.31 +0.7
602,841 - OHPLBJKB_00588 0.31 -0.2
602,841 - OHPLBJKB_00588 0.31 -1.5
602,843 + OHPLBJKB_00588 0.31 +0.4
602,843 + OHPLBJKB_00588 0.31 -0.3
602,843 + OHPLBJKB_00588 0.31 -0.5
602,843 + OHPLBJKB_00588 0.31 -0.5
602,844 - OHPLBJKB_00588 0.32 +0.2
602,844 - OHPLBJKB_00588 0.32 +2.8
602,844 - OHPLBJKB_00588 0.32 -0.3
602,864 - OHPLBJKB_00588 0.33 -0.5
602,864 - OHPLBJKB_00588 0.33 -0.3
602,914 - OHPLBJKB_00588 0.37 -0.2
602,960 + OHPLBJKB_00588 0.40 +0.5
602,960 + OHPLBJKB_00588 0.40 -0.1
602,961 - OHPLBJKB_00588 0.40 -0.5
602,961 - OHPLBJKB_00588 0.40 +0.2
602,974 + OHPLBJKB_00588 0.41 -0.3
602,974 + OHPLBJKB_00588 0.41 +0.1
602,974 + OHPLBJKB_00588 0.41 +0.5
603,003 + OHPLBJKB_00588 0.43 +0.7
603,004 - OHPLBJKB_00588 0.43 -0.0
603,004 - OHPLBJKB_00588 0.43 -0.3
603,212 + OHPLBJKB_00588 0.58 +0.1
603,213 - OHPLBJKB_00588 0.59 -1.3
603,213 - OHPLBJKB_00588 0.59 +1.4
603,311 + OHPLBJKB_00588 0.66 -0.7
603,311 + OHPLBJKB_00588 0.66 +0.1
603,312 - OHPLBJKB_00588 0.66 -0.2
603,312 - OHPLBJKB_00588 0.66 +0.4
603,316 + OHPLBJKB_00588 0.66 -0.1
603,317 - OHPLBJKB_00588 0.66 +0.6

Or see this region's nucleotide sequence