Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04427

Experiment: N4 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04425 and OHPLBJKB_04426 are separated by 46 nucleotidesOHPLBJKB_04426 and OHPLBJKB_04427 are separated by 249 nucleotidesOHPLBJKB_04427 and OHPLBJKB_04428 overlap by 1 nucleotidesOHPLBJKB_04428 and OHPLBJKB_04429 are separated by 45 nucleotides OHPLBJKB_04425: OHPLBJKB_04425 - hypothetical protein, at 76,458 to 76,880 _04425 OHPLBJKB_04426: OHPLBJKB_04426 - Antirestriction protein KlcA, at 76,927 to 77,352 _04426 OHPLBJKB_04427: OHPLBJKB_04427 - hypothetical protein, at 77,602 to 77,766 _04427 OHPLBJKB_04428: OHPLBJKB_04428 - hypothetical protein, at 77,766 to 78,542 _04428 OHPLBJKB_04429: OHPLBJKB_04429 - hypothetical protein, at 78,588 to 79,022 _04429 Position (kb) 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 76.702 kb on + strand, within OHPLBJKB_04425at 76.838 kb on + strandat 76.845 kb on + strandat 76.845 kb on + strandat 76.846 kb on - strandat 76.871 kb on + strandat 76.872 kb on - strandat 76.872 kb on - strandat 76.872 kb on - strandat 76.872 kb on - strandat 76.876 kb on + strandat 76.876 kb on + strandat 76.876 kb on + strandat 76.876 kb on + strandat 76.876 kb on + strandat 76.876 kb on + strandat 76.876 kb on + strandat 76.876 kb on + strandat 76.876 kb on + strandat 76.876 kb on + strandat 76.876 kb on + strandat 76.876 kb on + strandat 76.876 kb on + strandat 76.876 kb on + strandat 76.876 kb on + strandat 76.876 kb on + strandat 76.877 kb on - strandat 76.877 kb on - strandat 76.877 kb on - strandat 76.877 kb on - strandat 76.877 kb on - strandat 76.877 kb on - strandat 76.877 kb on - strandat 76.877 kb on - strandat 76.877 kb on - strandat 76.877 kb on - strandat 77.023 kb on + strand, within OHPLBJKB_04426at 77.023 kb on + strand, within OHPLBJKB_04426at 77.023 kb on + strand, within OHPLBJKB_04426at 77.023 kb on + strand, within OHPLBJKB_04426at 77.023 kb on + strand, within OHPLBJKB_04426at 77.024 kb on - strand, within OHPLBJKB_04426at 77.024 kb on - strand, within OHPLBJKB_04426at 77.024 kb on - strand, within OHPLBJKB_04426at 77.042 kb on + strand, within OHPLBJKB_04426at 77.168 kb on + strand, within OHPLBJKB_04426at 77.169 kb on - strand, within OHPLBJKB_04426at 77.247 kb on - strand, within OHPLBJKB_04426at 77.252 kb on + strand, within OHPLBJKB_04426at 77.252 kb on + strand, within OHPLBJKB_04426at 77.252 kb on + strand, within OHPLBJKB_04426at 77.252 kb on + strand, within OHPLBJKB_04426at 77.252 kb on + strand, within OHPLBJKB_04426at 77.253 kb on - strand, within OHPLBJKB_04426at 77.253 kb on - strand, within OHPLBJKB_04426at 77.253 kb on - strand, within OHPLBJKB_04426at 77.253 kb on - strand, within OHPLBJKB_04426at 77.288 kb on + strand, within OHPLBJKB_04426at 77.289 kb on - strand, within OHPLBJKB_04426at 77.289 kb on - strand, within OHPLBJKB_04426at 77.289 kb on - strand, within OHPLBJKB_04426at 77.345 kb on + strandat 77.377 kb on - strandat 77.648 kb on + strand, within OHPLBJKB_04427at 77.648 kb on + strand, within OHPLBJKB_04427at 77.648 kb on + strand, within OHPLBJKB_04427at 77.882 kb on + strand, within OHPLBJKB_04428at 77.882 kb on + strand, within OHPLBJKB_04428at 77.918 kb on + strand, within OHPLBJKB_04428at 77.918 kb on + strand, within OHPLBJKB_04428at 77.919 kb on - strand, within OHPLBJKB_04428at 77.919 kb on - strand, within OHPLBJKB_04428at 77.927 kb on + strand, within OHPLBJKB_04428at 77.928 kb on - strand, within OHPLBJKB_04428at 77.944 kb on + strand, within OHPLBJKB_04428at 77.944 kb on + strand, within OHPLBJKB_04428at 77.944 kb on + strand, within OHPLBJKB_04428at 77.945 kb on - strand, within OHPLBJKB_04428at 78.087 kb on + strand, within OHPLBJKB_04428at 78.131 kb on + strand, within OHPLBJKB_04428at 78.132 kb on - strand, within OHPLBJKB_04428at 78.187 kb on - strand, within OHPLBJKB_04428at 78.187 kb on - strand, within OHPLBJKB_04428at 78.412 kb on + strand, within OHPLBJKB_04428at 78.412 kb on + strand, within OHPLBJKB_04428at 78.412 kb on + strand, within OHPLBJKB_04428at 78.412 kb on + strand, within OHPLBJKB_04428at 78.413 kb on - strand, within OHPLBJKB_04428at 78.413 kb on - strand, within OHPLBJKB_04428at 78.413 kb on - strand, within OHPLBJKB_04428

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Per-strain Table

Position Strand Gene LocusTag Fraction N4 MOI10
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76,702 + OHPLBJKB_04425 0.58 +0.1
76,838 + -1.2
76,845 + +0.6
76,845 + -1.6
76,846 - +0.4
76,871 + +0.1
76,872 - +0.8
76,872 - +1.2
76,872 - +0.2
76,872 - -1.8
76,876 + -1.1
76,876 + -1.2
76,876 + +0.6
76,876 + +0.1
76,876 + +0.2
76,876 + -1.3
76,876 + +0.6
76,876 + +0.2
76,876 + +0.8
76,876 + +0.8
76,876 + -0.4
76,876 + -0.5
76,876 + +0.9
76,876 + +0.1
76,876 + -0.8
76,876 + -0.4
76,877 - -0.8
76,877 - +0.9
76,877 - -1.8
76,877 - -0.2
76,877 - +0.9
76,877 - +0.1
76,877 - -0.7
76,877 - -0.8
76,877 - -0.4
76,877 - +0.6
77,023 + OHPLBJKB_04426 0.23 -0.1
77,023 + OHPLBJKB_04426 0.23 +0.6
77,023 + OHPLBJKB_04426 0.23 -0.2
77,023 + OHPLBJKB_04426 0.23 -0.8
77,023 + OHPLBJKB_04426 0.23 +0.1
77,024 - OHPLBJKB_04426 0.23 +2.6
77,024 - OHPLBJKB_04426 0.23 -1.0
77,024 - OHPLBJKB_04426 0.23 +1.6
77,042 + OHPLBJKB_04426 0.27 +1.0
77,168 + OHPLBJKB_04426 0.57 -0.8
77,169 - OHPLBJKB_04426 0.57 -0.4
77,247 - OHPLBJKB_04426 0.75 -0.2
77,252 + OHPLBJKB_04426 0.76 -0.3
77,252 + OHPLBJKB_04426 0.76 +0.0
77,252 + OHPLBJKB_04426 0.76 -3.0
77,252 + OHPLBJKB_04426 0.76 +0.3
77,252 + OHPLBJKB_04426 0.76 +0.8
77,253 - OHPLBJKB_04426 0.77 -0.2
77,253 - OHPLBJKB_04426 0.77 +0.6
77,253 - OHPLBJKB_04426 0.77 -0.8
77,253 - OHPLBJKB_04426 0.77 -0.4
77,288 + OHPLBJKB_04426 0.85 +0.1
77,289 - OHPLBJKB_04426 0.85 +0.2
77,289 - OHPLBJKB_04426 0.85 +0.2
77,289 - OHPLBJKB_04426 0.85 +0.3
77,345 + +0.4
77,377 - -0.4
77,648 + OHPLBJKB_04427 0.28 +0.2
77,648 + OHPLBJKB_04427 0.28 -1.4
77,648 + OHPLBJKB_04427 0.28 -0.4
77,882 + OHPLBJKB_04428 0.15 -0.1
77,882 + OHPLBJKB_04428 0.15 -0.8
77,918 + OHPLBJKB_04428 0.20 -0.1
77,918 + OHPLBJKB_04428 0.20 +0.2
77,919 - OHPLBJKB_04428 0.20 -0.5
77,919 - OHPLBJKB_04428 0.20 -0.1
77,927 + OHPLBJKB_04428 0.21 +1.4
77,928 - OHPLBJKB_04428 0.21 -0.7
77,944 + OHPLBJKB_04428 0.23 -0.5
77,944 + OHPLBJKB_04428 0.23 +0.9
77,944 + OHPLBJKB_04428 0.23 -0.4
77,945 - OHPLBJKB_04428 0.23 -1.2
78,087 + OHPLBJKB_04428 0.41 +0.1
78,131 + OHPLBJKB_04428 0.47 +0.4
78,132 - OHPLBJKB_04428 0.47 -0.8
78,187 - OHPLBJKB_04428 0.54 +0.6
78,187 - OHPLBJKB_04428 0.54 +0.3
78,412 + OHPLBJKB_04428 0.83 -0.0
78,412 + OHPLBJKB_04428 0.83 +1.9
78,412 + OHPLBJKB_04428 0.83 -0.4
78,412 + OHPLBJKB_04428 0.83 +0.4
78,413 - OHPLBJKB_04428 0.83 -0.9
78,413 - OHPLBJKB_04428 0.83 +1.5
78,413 - OHPLBJKB_04428 0.83 -1.4

Or see this region's nucleotide sequence