Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04384

Experiment: N4 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04383 and OHPLBJKB_04384 are separated by 252 nucleotidesOHPLBJKB_04384 and OHPLBJKB_04385 are separated by 21 nucleotidesOHPLBJKB_04385 and OHPLBJKB_04386 are separated by 32 nucleotides OHPLBJKB_04383: OHPLBJKB_04383 - Coupling protein TraD, at 42,151 to 44,304 _04383 OHPLBJKB_04384: OHPLBJKB_04384 - Lipoprotein YlpA, at 44,557 to 45,291 _04384 OHPLBJKB_04385: OHPLBJKB_04385 - Protein TraS, at 45,313 to 45,834 _04385 OHPLBJKB_04386: OHPLBJKB_04386 - hypothetical protein, at 45,867 to 48,683 _04386 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1at 43.616 kb on + strand, within OHPLBJKB_04383at 43.616 kb on + strand, within OHPLBJKB_04383at 43.616 kb on + strand, within OHPLBJKB_04383at 43.617 kb on - strand, within OHPLBJKB_04383at 43.617 kb on - strand, within OHPLBJKB_04383at 43.617 kb on - strand, within OHPLBJKB_04383at 43.619 kb on + strand, within OHPLBJKB_04383at 43.620 kb on - strand, within OHPLBJKB_04383at 43.649 kb on + strand, within OHPLBJKB_04383at 43.649 kb on + strand, within OHPLBJKB_04383at 43.649 kb on + strand, within OHPLBJKB_04383at 43.649 kb on + strand, within OHPLBJKB_04383at 43.649 kb on + strand, within OHPLBJKB_04383at 43.663 kb on - strand, within OHPLBJKB_04383at 43.682 kb on + strand, within OHPLBJKB_04383at 43.683 kb on - strand, within OHPLBJKB_04383at 43.683 kb on - strand, within OHPLBJKB_04383at 43.713 kb on + strand, within OHPLBJKB_04383at 43.713 kb on + strand, within OHPLBJKB_04383at 43.929 kb on + strand, within OHPLBJKB_04383at 43.929 kb on + strand, within OHPLBJKB_04383at 43.930 kb on - strand, within OHPLBJKB_04383at 43.942 kb on - strand, within OHPLBJKB_04383at 43.982 kb on - strand, within OHPLBJKB_04383at 43.982 kb on - strand, within OHPLBJKB_04383at 43.982 kb on - strand, within OHPLBJKB_04383at 44.005 kb on - strand, within OHPLBJKB_04383at 44.005 kb on - strand, within OHPLBJKB_04383at 44.005 kb on - strand, within OHPLBJKB_04383at 44.005 kb on - strand, within OHPLBJKB_04383at 44.006 kb on + strand, within OHPLBJKB_04383at 44.006 kb on + strand, within OHPLBJKB_04383at 44.006 kb on + strand, within OHPLBJKB_04383at 44.007 kb on - strand, within OHPLBJKB_04383at 44.007 kb on - strand, within OHPLBJKB_04383at 44.007 kb on - strand, within OHPLBJKB_04383at 44.007 kb on - strand, within OHPLBJKB_04383at 44.020 kb on + strand, within OHPLBJKB_04383at 44.058 kb on - strand, within OHPLBJKB_04383at 44.090 kb on - strandat 44.115 kb on + strandat 44.126 kb on + strandat 44.127 kb on - strandat 44.131 kb on - strandat 44.345 kb on + strandat 44.565 kb on + strandat 44.664 kb on - strand, within OHPLBJKB_04384at 44.664 kb on - strand, within OHPLBJKB_04384at 44.664 kb on - strand, within OHPLBJKB_04384at 44.664 kb on - strand, within OHPLBJKB_04384at 44.667 kb on + strand, within OHPLBJKB_04384at 44.667 kb on + strand, within OHPLBJKB_04384at 44.668 kb on - strand, within OHPLBJKB_04384at 44.668 kb on - strand, within OHPLBJKB_04384at 44.689 kb on - strand, within OHPLBJKB_04384at 44.764 kb on - strand, within OHPLBJKB_04384at 44.764 kb on - strand, within OHPLBJKB_04384at 44.796 kb on + strand, within OHPLBJKB_04384at 44.797 kb on - strand, within OHPLBJKB_04384at 44.797 kb on - strand, within OHPLBJKB_04384at 44.797 kb on - strand, within OHPLBJKB_04384at 44.798 kb on + strand, within OHPLBJKB_04384at 44.798 kb on + strand, within OHPLBJKB_04384at 44.798 kb on + strand, within OHPLBJKB_04384at 44.798 kb on + strand, within OHPLBJKB_04384at 44.799 kb on - strand, within OHPLBJKB_04384at 44.799 kb on - strand, within OHPLBJKB_04384at 44.799 kb on - strand, within OHPLBJKB_04384at 44.833 kb on - strand, within OHPLBJKB_04384at 44.889 kb on + strand, within OHPLBJKB_04384at 44.889 kb on + strand, within OHPLBJKB_04384at 44.890 kb on - strand, within OHPLBJKB_04384at 44.939 kb on + strand, within OHPLBJKB_04384at 45.015 kb on - strand, within OHPLBJKB_04384at 45.017 kb on + strand, within OHPLBJKB_04384at 45.017 kb on + strand, within OHPLBJKB_04384at 45.017 kb on + strand, within OHPLBJKB_04384at 45.017 kb on + strand, within OHPLBJKB_04384at 45.018 kb on - strand, within OHPLBJKB_04384at 45.018 kb on - strand, within OHPLBJKB_04384at 45.130 kb on + strand, within OHPLBJKB_04384at 45.130 kb on + strand, within OHPLBJKB_04384at 45.131 kb on - strand, within OHPLBJKB_04384at 45.131 kb on - strand, within OHPLBJKB_04384at 45.131 kb on - strand, within OHPLBJKB_04384at 45.352 kb on - strandat 45.397 kb on + strand, within OHPLBJKB_04385at 46.155 kb on - strand, within OHPLBJKB_04386at 46.184 kb on + strand, within OHPLBJKB_04386at 46.212 kb on + strand, within OHPLBJKB_04386at 46.212 kb on + strand, within OHPLBJKB_04386at 46.229 kb on + strand, within OHPLBJKB_04386at 46.233 kb on + strand, within OHPLBJKB_04386at 46.233 kb on + strand, within OHPLBJKB_04386at 46.233 kb on + strand, within OHPLBJKB_04386at 46.233 kb on + strand, within OHPLBJKB_04386at 46.233 kb on + strand, within OHPLBJKB_04386at 46.233 kb on + strand, within OHPLBJKB_04386at 46.234 kb on - strand, within OHPLBJKB_04386at 46.234 kb on - strand, within OHPLBJKB_04386at 46.234 kb on - strand, within OHPLBJKB_04386at 46.234 kb on - strand, within OHPLBJKB_04386at 46.234 kb on - strand, within OHPLBJKB_04386at 46.279 kb on - strand, within OHPLBJKB_04386at 46.279 kb on - strand, within OHPLBJKB_04386

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Per-strain Table

Position Strand Gene LocusTag Fraction N4 MOI10
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43,616 + OHPLBJKB_04383 0.68 -0.5
43,616 + OHPLBJKB_04383 0.68 -0.2
43,616 + OHPLBJKB_04383 0.68 +0.6
43,617 - OHPLBJKB_04383 0.68 -0.7
43,617 - OHPLBJKB_04383 0.68 -0.7
43,617 - OHPLBJKB_04383 0.68 +0.0
43,619 + OHPLBJKB_04383 0.68 +0.3
43,620 - OHPLBJKB_04383 0.68 +0.4
43,649 + OHPLBJKB_04383 0.70 -1.4
43,649 + OHPLBJKB_04383 0.70 -0.2
43,649 + OHPLBJKB_04383 0.70 +0.9
43,649 + OHPLBJKB_04383 0.70 +0.6
43,649 + OHPLBJKB_04383 0.70 -0.4
43,663 - OHPLBJKB_04383 0.70 +0.9
43,682 + OHPLBJKB_04383 0.71 -0.7
43,683 - OHPLBJKB_04383 0.71 +0.0
43,683 - OHPLBJKB_04383 0.71 -0.1
43,713 + OHPLBJKB_04383 0.73 +0.6
43,713 + OHPLBJKB_04383 0.73 +0.9
43,929 + OHPLBJKB_04383 0.83 +1.6
43,929 + OHPLBJKB_04383 0.83 +0.3
43,930 - OHPLBJKB_04383 0.83 +0.1
43,942 - OHPLBJKB_04383 0.83 +1.0
43,982 - OHPLBJKB_04383 0.85 -1.4
43,982 - OHPLBJKB_04383 0.85 -0.4
43,982 - OHPLBJKB_04383 0.85 -1.1
44,005 - OHPLBJKB_04383 0.86 -0.1
44,005 - OHPLBJKB_04383 0.86 -0.6
44,005 - OHPLBJKB_04383 0.86 -0.4
44,005 - OHPLBJKB_04383 0.86 +0.2
44,006 + OHPLBJKB_04383 0.86 -1.4
44,006 + OHPLBJKB_04383 0.86 -0.3
44,006 + OHPLBJKB_04383 0.86 -0.7
44,007 - OHPLBJKB_04383 0.86 -1.0
44,007 - OHPLBJKB_04383 0.86 -2.1
44,007 - OHPLBJKB_04383 0.86 +0.9
44,007 - OHPLBJKB_04383 0.86 +0.0
44,020 + OHPLBJKB_04383 0.87 +0.2
44,058 - OHPLBJKB_04383 0.89 -0.1
44,090 - -1.0
44,115 + +0.3
44,126 + -1.7
44,127 - +0.3
44,131 - +0.6
44,345 + +0.2
44,565 + -0.5
44,664 - OHPLBJKB_04384 0.15 -0.3
44,664 - OHPLBJKB_04384 0.15 -1.2
44,664 - OHPLBJKB_04384 0.15 +1.2
44,664 - OHPLBJKB_04384 0.15 -0.7
44,667 + OHPLBJKB_04384 0.15 -0.1
44,667 + OHPLBJKB_04384 0.15 -0.4
44,668 - OHPLBJKB_04384 0.15 -0.4
44,668 - OHPLBJKB_04384 0.15 +0.6
44,689 - OHPLBJKB_04384 0.18 -0.6
44,764 - OHPLBJKB_04384 0.28 -0.1
44,764 - OHPLBJKB_04384 0.28 -0.4
44,796 + OHPLBJKB_04384 0.33 +0.4
44,797 - OHPLBJKB_04384 0.33 -1.4
44,797 - OHPLBJKB_04384 0.33 -0.8
44,797 - OHPLBJKB_04384 0.33 +0.3
44,798 + OHPLBJKB_04384 0.33 +0.5
44,798 + OHPLBJKB_04384 0.33 -1.4
44,798 + OHPLBJKB_04384 0.33 -0.3
44,798 + OHPLBJKB_04384 0.33 +0.6
44,799 - OHPLBJKB_04384 0.33 -0.6
44,799 - OHPLBJKB_04384 0.33 -2.3
44,799 - OHPLBJKB_04384 0.33 -1.0
44,833 - OHPLBJKB_04384 0.38 -1.3
44,889 + OHPLBJKB_04384 0.45 -0.7
44,889 + OHPLBJKB_04384 0.45 -1.6
44,890 - OHPLBJKB_04384 0.45 -1.8
44,939 + OHPLBJKB_04384 0.52 +0.6
45,015 - OHPLBJKB_04384 0.62 -0.6
45,017 + OHPLBJKB_04384 0.63 -1.0
45,017 + OHPLBJKB_04384 0.63 -0.2
45,017 + OHPLBJKB_04384 0.63 -1.0
45,017 + OHPLBJKB_04384 0.63 -0.4
45,018 - OHPLBJKB_04384 0.63 -0.1
45,018 - OHPLBJKB_04384 0.63 -2.0
45,130 + OHPLBJKB_04384 0.78 +1.1
45,130 + OHPLBJKB_04384 0.78 -1.4
45,131 - OHPLBJKB_04384 0.78 +1.6
45,131 - OHPLBJKB_04384 0.78 -0.3
45,131 - OHPLBJKB_04384 0.78 -0.6
45,352 - -1.3
45,397 + OHPLBJKB_04385 0.16 -0.4
46,155 - OHPLBJKB_04386 0.10 -0.4
46,184 + OHPLBJKB_04386 0.11 +0.9
46,212 + OHPLBJKB_04386 0.12 +0.0
46,212 + OHPLBJKB_04386 0.12 +0.2
46,229 + OHPLBJKB_04386 0.13 -0.2
46,233 + OHPLBJKB_04386 0.13 +0.0
46,233 + OHPLBJKB_04386 0.13 -0.2
46,233 + OHPLBJKB_04386 0.13 -0.4
46,233 + OHPLBJKB_04386 0.13 +0.9
46,233 + OHPLBJKB_04386 0.13 -0.4
46,233 + OHPLBJKB_04386 0.13 -1.2
46,234 - OHPLBJKB_04386 0.13 -1.6
46,234 - OHPLBJKB_04386 0.13 -0.5
46,234 - OHPLBJKB_04386 0.13 +0.4
46,234 - OHPLBJKB_04386 0.13 -2.6
46,234 - OHPLBJKB_04386 0.13 -0.1
46,279 - OHPLBJKB_04386 0.15 -1.3
46,279 - OHPLBJKB_04386 0.15 +0.2

Or see this region's nucleotide sequence